Browse Element(s) Details


OsAffx.10912.1.S1_x_at

Description gb:NM_184329.1
DB_XREF= gi:34895737
GEN=P0019D06.27
TID=OsAffx.10912.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0019D06.27 (P0019D06.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0504011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04990Os.31513.1.S1_at11/111+2346870..2350304Mitochondrial carrier protein, expressed
LOC_Os01g05000OsAffx.1934.1.S1_at11/111+2352985..2353847hypothetical protein
LOC_Os01g05010Os.1625.1.S1_at11/111+2354653..2357239Mitochondrial glycoprotein, expressed
LOC_Os01g05020OsAffx.23117.1.S1_at11/111+2358601..2360616hypothetical protein
LOC_Os01g05030Os.43764.1.A1_at9/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.2.S1_x_at3/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.7.S1_x_at3/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.25967.2.S1_at1/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.3.S1_x_at1/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05040OsAffx.10912.1.S1_x_at11/111+2366331..2368118hypothetical protein
LOC_Os01g05050OsAffx.10571.1.S1_at11/111+2369125..2370868Mitochondrial glycoprotein
LOC_Os01g05060Os.11429.1.S1_at11/111+2371287..2373563Mitochondrial glycoprotein, expressed
LOC_Os01g05070Os.17266.1.S1_at11/111+2375613..2379386expressed protein
LOC_Os01g05080Os.1798.1.S1_at11/111+2380332..2382440Thylakoid lumenal 15 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g05090Os.1799.1.S1_a_at11/111+2383175..2385399expressed protein
LOC_Os01g05100OsAffx.25610.1.S1_s_at11/111+2385407..2387285expressed protein
LOC_Os01g05100Os.53463.1.S1_at9/111+2385407..2387285expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10912.1.S1_x_at--133--7391Chr01:2366950..2366974 (25 bp)
GTGAGCTCAACAACTGCGATGGCAA
LOC_Os01g05040
OsAffx.10912.1.S1_x_at--1147--6971Chr01:2366901..2366925 (25 bp)
GTACCGGACAGGCATTATCGACTTG
LOC_Os01g05040
OsAffx.10912.1.S1_x_at--926--5431Chr01:2366877..2366901 (25 bp)
GAACCTCGATCGTGATGTCTTGCAC
LOC_Os01g05040
OsAffx.10912.1.S1_x_at--779--1491Chr01:2366753..2366777 (25 bp)
AGCACGTACACGAGCACTTCGATGG
LOC_Os01g05040
OsAffx.10912.1.S1_x_at--819--871Chr01:2366732..2366756 (25 bp)
ATGGCCCGTGGCACACTGCAGAATG
LOC_Os01g05040
OsAffx.10912.1.S1_x_at--559--611Chr01:2366688..2366712 (25 bp)
ATGCGAGTCCGCCAGTGACAAGTAT
LOC_Os01g05040
OsAffx.10912.1.S1_x_at--338--5951Chr01:2366627..2366651 (25 bp)
GAGCACAATGTTCGGTTCCTATCTG
LOC_Os01g05040
OsAffx.10912.1.S1_x_at--243--2911Chr01:2366595..2366619 (25 bp)
AAGGATCGCCGTGTACCTCGTTGAG
LOC_Os01g05040
OsAffx.10912.1.S1_x_at--620--9811Chr01:2366443..2366467 (25 bp)
TAACGATCATTTGGGCTCTGCTGTC
LOC_Os01g05040
OsAffx.10912.1.S1_x_at--542--2211Chr01:2366401..2366425 (25 bp)
ACAAGCTTCAACATCGTGGCGGTGC
LOC_Os01g05040
OsAffx.10912.1.S1_x_at--908--4251Chr01:2366375..2366399 (25 bp)
CCGGGATTGCCTATTCTACTTGAAG
LOC_Os01g05040
Target Sequence 
GTGAGCTCAACAACTGCGATGGCAAGATCACCGACGGGAGGATGTGGATGTACCGGACAGGCATTATCGACTTGAACCTC
GATCGTGATGTCTTGCACGCATGGACACCACTGCTGGTGGCATTCCAGCCGGAGCTGGTCCCGGACAGCACGTACACGAG
CACTTCGATGGCCCGTGGCACACTGCAGAATGCCTGCGACTTCCTCGCCAAATGCGAGTCCGCCAGTGACAAGTATGATA
AGCTGATGGATCTGGGGCGCTTGGACCACACGGAGCACAATGTTCGGTTCCTATCTGAGGGCGCAAGGATCGCCGTGTAC
CTCGTTGAGCGGATCGAGGATGCCGGGAAGCGGTGGAAGGTGCTTGCCGCCTTCTGGGCAAACATGATGTTGTACATCGC
CCCGTCGGATAGGGCGGTCGCACACGCCACGAGGATGGCCACTGGCGGGGAGTTTGTAACGATCATTTGGGCTCTGCTGT
CACATGCCCATGTAGTAGACAAGCTTCAACATCGTGGCGGTGCCCCGGGATTGCCTATTCTACTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10912.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis