Browse Element(s) Details


OsAffx.10967.1.S1_x_at

Description gb:NM_189560.1
DB_XREF= gi:34906203
GEN=OJ1174_D05.20
TID=OsAffx.10967.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1174_D05.20 (OJ1174_D05.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g227704/11hypothetical protein
LOC_Os01g086001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22740Os.46012.2.S1_x_at4/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22740Os.27088.1.A1_x_at3/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22740Os.46012.3.S1_x_at1/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22740Os.54691.1.S1_x_at1/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22750NANA12+12838213..12838922hypothetical protein
LOC_Os12g22760OsAffx.12861.4.S1_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22760OsAffx.12861.4.S1_x_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_s_at11/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_x_at8/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_at6/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.10967.1.S1_x_at4/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.2.S1_at2/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.4.S1_x_at1/1112+12845213..12847529hypothetical protein
LOC_Os12g22780OsAffx.31835.1.S1_at11/1112+12850448..12851431hypothetical protein
LOC_Os12g22790NANA12+12860537..12860836hypothetical protein
LOC_Os12g22800Os.54004.1.S1_at11/1112+12861763..12863518expressed protein
LOC_Os12g22810Os.7279.1.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_x_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.3.S1_at8/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10967.1.S1_x_at--159--4012Chr02:4014579..4014604 (25 bp)
CGTGCTCCCGCGGACGGTGGAAGGG
NONE
OsAffx.10967.1.S1_x_at--25--6031Chr01:4280462..4280806 (25 bp)
GAGAGGATGACATGTCAGCCCAGGA
NONE
OsAffx.10967.1.S1_x_at--552--6171Chr01:4280460..4280804 (25 bp)
GAGGATGACATGTCAGCCCAGGAAA
NONE
OsAffx.10967.1.S1_x_at--1001--7971Chr01:4280458..4280802 (25 bp)
GGATGACATGTCAGCCCAGGAAAAA
NONE
OsAffx.10967.1.S1_x_at--645--6311Chr01:4280457..4280801 (25 bp)
GATGACATGTCAGCCCAGGAAAAAA
NONE
OsAffx.10967.1.S1_x_at--634--8732Chr12:12845681..12845700 (20 bp)
TGTCAGCCCAGGAAAAAATCACCTA
LOC_Os12g22770
OsAffx.10967.1.S1_x_at--960--2433Chr12:12845690..12845736 (25 bp)
AAAATCACCTACTCGAGAGGAGCGG
LOC_Os12g22770
OsAffx.10967.1.S1_x_at--986--371Chr01:4280433..4280457 (25 bp)
ATCACCTACTCGAGAGGAGCGGAAA
NONE
OsAffx.10967.1.S1_x_at--1067--8073Chr12:12845708..12845732 (25 bp)
GGAGCGGAAAAATTCCTCGAGAGGA
LOC_Os12g22770
OsAffx.10967.1.S1_x_at--807--2393Chr12:12845715..12845739 (25 bp)
AAAAATTCCTCGAGAGGAGCGGCGG
LOC_Os12g22770
OsAffx.10967.1.S1_x_at--161--5751Chr01:4280319..4280343 (25 bp)
GACGGCGACGGCATAGCTCTCTTCT
LOC_Os01g08600
Target Sequence 
CGTGCTCCCGCGGACGGTGGAAGGGGAGAGAAAGAGAGAAGGGAGAAAGGGAGGGAGGAAGAAGAAAGAGAGAGGATGAC
ATGTCAGCCCAGGAAAAAATCACCTACTCGAGAGGAGCGGAAAAATTCCTCGAGAGGAGCGGCGGCGCTACGAAGACACG
GACGCGACGGCGGGGGCGGAGCGCGGCGCGACCCAGAGGCGACGGCTACGGCGACGGCGACGGCATAGCTCTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10967.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis