Browse Element(s) Details


OsAffx.10970.1.S1_at

Description tigr:9629.m00808
TID=OsAffx.10970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g086909/11holocarboxylase synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08630OsAffx.21914.1.S1_at11/111+4294733..4299183expressed protein
LOC_Os01g08630OsAffx.21914.2.S1_at9/111+4294733..4299183expressed protein
LOC_Os01g08640NANA1+4301587..4301969transposon protein, putative, unclassified
LOC_Os01g08650Os.37600.1.S1_at10/111+4303684..4306737expressed protein
LOC_Os01g08660Os.7545.1.S1_a_at11/111+4310471..4312614Major intrinsic protein, expressed
LOC_Os01g08670Os.51447.1.S1_s_at11/111+4314803..4315582expressed protein
LOC_Os01g08680Os.34739.1.S1_a_at11/111+4319529..4323144expressed protein
LOC_Os01g08680Os.34739.2.S1_at1/111+4319529..4323144expressed protein
LOC_Os01g08690OsAffx.10970.1.S1_at9/111+4323380..4325632holocarboxylase synthetase, putative, expressed
LOC_Os01g08700Os.7987.1.S1_at11/111+4326162..4335288GIGANTEA protein, putative, expressed
LOC_Os01g08710Os.55762.1.S1_at11/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710Os.30505.1.S1_at10/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_x_at9/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_at8/111+4337651..4353270WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10970.1.S1_at--1058--8011Chr01:4323534..4323558 (25 bp)
GGAGGAGATGCACCTGGCGTTCAGG
LOC_Os01g08690
OsAffx.10970.1.S1_at--1070--4511NONE
GCCGCGCCATGGAGAATGTCTATCG
NONE
OsAffx.10970.1.S1_at--157--771Chr01:4324062..4324086 (25 bp)
ATGTCTATCGATGGATTTGCAGCAA
LOC_Os01g08690
OsAffx.10970.1.S1_at--130--6251Chr01:4324071..4324095 (25 bp)
GATGGATTTGCAGCAAGCATCAAGA
LOC_Os01g08690
OsAffx.10970.1.S1_at--1008--10231Chr01:4324099..4324123 (25 bp)
TTTGGAGGTGTCTGTTGCCGATCTA
LOC_Os01g08690
OsAffx.10970.1.S1_at--501--8811Chr01:4324111..4324135 (25 bp)
TGTTGCCGATCTAGTTGCTTTCCTG
LOC_Os01g08690
OsAffx.10970.1.S1_at--221--1231NONE
AGTTGCTTTCCTGCAGTTCTTTTCT
NONE
OsAffx.10970.1.S1_at--716--6671Chr01:4325342..4325366 (25 bp)
GTTGCTTGCAAAAACCATGCTCTGG
LOC_Os01g08690
OsAffx.10970.1.S1_at--666--2411Chr01:4325352..4325376 (25 bp)
AAAACCATGCTCTGGTTAACAAGGA
LOC_Os01g08690
OsAffx.10970.1.S1_at--350--4071Chr01:4325386..4325410 (25 bp)
CGAGGATGGTGCATTAGTTGTTGAT
LOC_Os01g08690
OsAffx.10970.1.S1_at--180--1251Chr01:4325401..4325425 (25 bp)
AGTTGTTGATGAATTTACTGCTGTG
LOC_Os01g08690
Target Sequence 
GGAGGAGATGCACCTGGCGTTCAGGGGCGCCGCCAACGCGCTGTCGCAGGTGTACGGGCAGGCCGTGGCCGCGCAGGAGA
AGTCGTTCCGCGCCGGCGAGCGCCGCGCCATGGAGAATGTCTATCGATGGATTTGCAGCAAGCATCAAGAAGGTTTGGAG
GTGTCTGTTGCCGATCTAGTTGCTTTCCTGCAGTTCTTTTCTGTTGCTTGCAAAAACCATGCTCTGGTTAACAAGGATCA
GGAGGACGAGGATGGTGCATTAGTTGTTGATGAATTTACTGCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis