Browse Element(s) Details


OsAffx.1108.1.S1_at

Description gb:NM_189967.1
DB_XREF= gi:34907017
GEN=P0482D04.2
TID=OsAffx.1108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0482D04.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7006010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70030NANA1+40840606..40845440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g70040NANA1+40848049..40851294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g70050OsAffx.23985.1.S1_at11/111+40853440..40853961Auxin responsive protein
LOC_Os01g70060OsAffx.1108.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.7001.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.46177.1.S1_x_at8/111+40867830..40881600expressed protein
LOC_Os01g70080Os.50370.1.S1_at11/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70080Os.47363.1.A1_at4/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70090Os.18822.1.A1_at11/111+40890382..40893189enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g70100Os.22715.1.S1_at10/111+40893532..40896618DHHC zinc finger domain containing protein, expressed
LOC_Os01g70110Os.14047.2.S1_x_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_a_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.2.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_at11/111+40899671..40900830No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1108.1.S1_at--217--2151NONE
ACAGAGACTGTGTTTTCAGCGCCTC
NONE
OsAffx.1108.1.S1_at--297--2891Chr01:40877555..40877579 (25 bp)
AAGGGAGCAATTGTGGCCGCTGCCT
LOC_Os01g70060
OsAffx.1108.1.S1_at--87--7791Chr01:40877474..40877498 (25 bp)
GGTGCTGCTCGATGGCAACATGCAA
LOC_Os01g70060
OsAffx.1108.1.S1_at--1015--2931Chr01:40877451..40877475 (25 bp)
AAGGCTATAACTACGCAATGGCATG
LOC_Os01g70060
OsAffx.1108.1.S1_at--1124--5171Chr01:40877437..40877461 (25 bp)
GCAATGGCATGTTCTTCGAGGACGA
LOC_Os01g70060
OsAffx.1108.1.S1_at--1112--1731Chr01:40877408..40877432 (25 bp)
ACCATTGCAGCTAACTTCTTCGATT
LOC_Os01g70060
OsAffx.1108.1.S1_at--338--1491Chr01:40876279..40876299 (21 bp)
AGCAAGATCCGATTGAGCCCTCAAG
LOC_Os01g70060
OsAffx.1108.1.S1_at--1063--2951Chr01:40876234..40876258 (25 bp)
AATGGCGGCGTCCTTAAGTCCGACA
LOC_Os01g70060
OsAffx.1108.1.S1_at--252--7871Chr01:40876188..40876212 (25 bp)
GGTTTAGCCGCATCAGCAACCGAAG
LOC_Os01g70060
OsAffx.1108.1.S1_at--858--3391Chr01:40876163..40876187 (25 bp)
CAGCTATAGGAAGTGCGGCCGTCAG
LOC_Os01g70060
OsAffx.1108.1.S1_at--205--4031Chr01:40876144..40876168 (25 bp)
CGTCAGCGCAGATATTGCCGGCGAT
LOC_Os01g70060
Target Sequence 
ACAGAGACTGTGTTTTCAGCGCCTCCTTGGCGGGATGATTTCAAGGGAGCAATTGTGGCCGCTGCCTTCGACGTGGGGGT
TCGCGGATGTTGTGTTGGCAGAGGGCAACAAGAAGCGTGCGAAGGTGCTGCTCGATGGCAACATGCAAGGCTATAACTAC
GCAATGGCATGTTCTTCGAGGACGACAACACCATTGCAGCTAACTTCTTCGATTTTGTTTTTCTCCTTGGCTACATGTAT
GCATAATCATGATTGCAAATGTGTTCATAATCATGATTGCAAATGTGTGAACAAACCCCCAAAAGAAAGCAAGATCCGAT
TGAGCCCTCAAGTCTGGACGGGCAAAGCAGTCAATGGCGGCGTCCTTAAGTCCGACACAATTGAGGTGGATGCGCCTGGG
TTTAGCCGCATCAGCAACCGAAGCAGCTATAGGAAGTGCGGCCGTCAGCGCAGATATTGCCGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis