Browse Element(s) Details


OsAffx.11096.1.S1_at

Description tigr:9629.m01789
TID=OsAffx.11096.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SRF-type transcription factor (DNA-binding and dimerisation domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1842011/11SRF-type transcription factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18390OsAffx.18764.2.S1_at11/111+10330316..10334290hypothetical protein
LOC_Os01g18400Os.36593.1.S1_at11/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_x_at10/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_at8/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18410Os.9858.2.S1_x_at11/111+10343489..10346650hypothetical protein
LOC_Os01g18410Os.9858.1.S1_at3/111+10343489..10346650hypothetical protein
LOC_Os01g18420OsAffx.11096.1.S1_at11/111+10349207..10349929SRF-type transcription factor family protein
LOC_Os01g18440OsAffx.11097.1.S1_at11/111+10363189..10364109SRF-type transcription factor family protein
LOC_Os01g18450Os.36549.1.S1_at2/111+10366840..10367181expressed protein
LOC_Os01g18460OsAffx.11098.1.S1_at10/111+10372711..10373713hypothetical protein
LOC_Os01g18460OsAffx.27834.1.S1_at1/111+10372711..10373713hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11096.1.S1_at--969--1951Chr01:10349421..10349445 (25 bp)
ACTCGGCGCCGAACATTGATAGGTT
LOC_Os01g18420
OsAffx.11096.1.S1_at--864--971Chr01:10349463..10349487 (25 bp)
AGGAGCAGTACCTCCGAAAGCGCAT
LOC_Os01g18420
OsAffx.11096.1.S1_at--874--6271Chr01:10349522..10349546 (25 bp)
GATGTCAACCGTGAGCGTGATGCTA
LOC_Os01g18420
OsAffx.11096.1.S1_at--504--1731Chr01:10349546..10349570 (25 bp)
ACCATCATGCTTTATGAGGCCGCCA
LOC_Os01g18420
OsAffx.11096.1.S1_at--966--8491Chr01:10349586..10349610 (25 bp)
TGGCAGACCTCAATGTCCAGGAGCT
LOC_Os01g18420
OsAffx.11096.1.S1_at--66--8931Chr01:10349635..10349659 (25 bp)
TGAGCGCATCAACCACCTGAAGGAA
LOC_Os01g18420
OsAffx.11096.1.S1_at--291--5311Chr01:10349653..10349677 (25 bp)
GAAGGAACGCATTGAGCGCCTTGGA
LOC_Os01g18420
OsAffx.11096.1.S1_at--971--2611Chr01:10349712..10349736 (25 bp)
AACCGACGGAGGCATCATCATCCTT
LOC_Os01g18420
OsAffx.11096.1.S1_at--341--4871Chr01:10349743..10349767 (25 bp)
GCTAGTGCCATACGCCAATGGTGCT
LOC_Os01g18420
OsAffx.11096.1.S1_at--1003--5091Chr01:10349799..10349823 (25 bp)
GCACGCATCAGAAAGGCTGGTTCAT
LOC_Os01g18420
OsAffx.11096.1.S1_at--278--8091Chr01:10349853..10349877 (25 bp)
GGACCTCTGCCGACGTTGAAGGCAA
LOC_Os01g18420
Target Sequence 
ACTCGGCGCCGAACATTGATAGGTTCAAGAGGGTGACGAACCAGGAGCAGTACCTCCGAAAGCGCATCGCCAAGGCTCGG
GAGCGCACGAGCAAGGCGGACGATGTCAACCGTGAGCGTGATGCTACCATCATGCTTTATGAGGCCGCCACCGATAAGCG
CCCAGTGGCAGACCTCAATGTCCAGGAGCTCACCAACCTCGGATTGGTGATCAATGAGCGCATCAACCACCTGAAGGAAC
GCATTGAGCGCCTTGGAGGTGCGGCCCTCATGGCGCCACCGCCATCGACGCAACCGACGGAGGCATCATCATCCTTGCCA
CCGCTAGTGCCATACGCCAATGGTGCTGGCATGGAAGGGAACAAGAGGATGAAGGTGAGCACGCATCAGAAAGGCTGGTT
CATTAACATGAGCACCATGACAGGTGACGCAGGGACCTCTGCCGACGTTGAAGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis