Browse Element(s) Details


OsAffx.11098.1.S1_at

Description tigr:9629.m01793
TID=OsAffx.11098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1846010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18420OsAffx.11096.1.S1_at11/111+10349207..10349929SRF-type transcription factor family protein
LOC_Os01g18440OsAffx.11097.1.S1_at11/111+10363189..10364109SRF-type transcription factor family protein
LOC_Os01g18450Os.36549.1.S1_at2/111+10366840..10367181expressed protein
LOC_Os01g18460OsAffx.11098.1.S1_at10/111+10372711..10373713hypothetical protein
LOC_Os01g18460OsAffx.27834.1.S1_at1/111+10372711..10373713hypothetical protein
LOC_Os01g18470Os.41695.15.S1_s_at11/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18470Os.41695.5.S1_x_at8/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18470Os.41695.4.S1_x_at4/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18470Os.41695.3.S1_x_at3/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18470Os.41695.2.S1_x_at3/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18480Os.35344.18.S1_x_at10/111+10386163..10393062transposon protein, putative, Mutator sub-class
LOC_Os01g18480Os.35344.3.S1_x_at7/111+10386163..10393062transposon protein, putative, Mutator sub-class
LOC_Os01g18480OsAffx.22940.5.S1_at5/111+10386163..10393062transposon protein, putative, Mutator sub-class
LOC_Os01g18480OsAffx.22940.5.S1_x_at4/111+10386163..10393062transposon protein, putative, Mutator sub-class
LOC_Os01g18490NANA1+10396723..10397387hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11098.1.S1_at--724--2651Chr01:10373659..10373683 (25 bp)
AAGCCCGTAACTGTAGCGCGAGTCA
LOC_Os01g18460
OsAffx.11098.1.S1_at--1073--3871Chr01:10373649..10373673 (25 bp)
CTGTAGCGCGAGTCAAGATGGGATT
LOC_Os01g18460
OsAffx.11098.1.S1_at--1102--6251Chr01:10373633..10373657 (25 bp)
GATGGGATTGCCTCCACATGTTGTC
LOC_Os01g18460
OsAffx.11098.1.S1_at--205--2111Chr01:10373618..10373642 (25 bp)
ACATGTTGTCCGCTCGCGAGATGGC
LOC_Os01g18460
OsAffx.11098.1.S1_at--739--1311Chr01:10373600..10373624 (25 bp)
AGATGGCTGTGGGTCGTTATTTGTT
LOC_Os01g18460
OsAffx.11098.1.S1_at--63--7811Chr01:10373589..10373613 (25 bp)
GGTCGTTATTTGTTTGCCCAGGCCA
LOC_Os01g18460
OsAffx.11098.1.S1_at--543--10191Chr01:10373583..10373607 (25 bp)
TATTTGTTTGCCCAGGCCAATATCA
LOC_Os01g18460
OsAffx.11098.1.S1_at--1110--8431NONE
GGCCAATATCATCCTGCTAAAAAGC
NONE
OsAffx.11098.1.S1_at--249--9071Chr01:10372918..10372941 (24 bp)
TGCTAAAAAGCACACAACTGATGAT
LOC_Os01g18460
OsAffx.11098.1.S1_at--1080--10491Chr01:10372866..10372890 (25 bp)
TTCACAACTAAAAAGCACACGACTG
LOC_Os01g18460
OsAffx.11098.1.S1_at--904--6512Chr09:21701641..21701667 (24 bp)
GATATTGGAGAAGGCGACAACGACG
NONE
Target Sequence 
AAGCCCGTAACTGTAGCGCGAGTCAAGATGGGATTGCCTCCACATGTTGTCCGCTCGCGAGATGGCTGTGGGTCGTTATT
TGTTTGCCCAGGCCAATATCATCCTGCTAAAAAGCACACAACTGATGATTCAAATTTAGGAGATGAAAAAGATACCTTCA
CAACTAAAAAGCACACGACTGATAAATCAAAATTAGGAGATGGAAAAGATACCACAACAAAAATTCTAGATATTGGAGAA
GGCGACAACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis