Browse Element(s) Details


OsAffx.11114.1.S1_at

Description tigr:9629.m01898
TID=OsAffx.11114.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pectinesterase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1944011/11Pectinesterase family protein
LOC_Os09g373001/11Sodium/hydrogen exchanger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19390OsAffx.23307.1.S1_at11/111+10966109..10969659Acyltransferase family protein, expressed
LOC_Os01g19400Os.31119.1.S1_at11/111+10973963..10976748expressed protein
LOC_Os01g19410Os.12557.1.S1_at11/111+10977518..10980117expressed protein
LOC_Os01g19420Os.8035.1.S1_at11/111+10982871..10983769transposon protein, putative, unclassified, expressed
LOC_Os01g19430Os.36371.1.S1_at10/111+10987597..109883953'-5' exonuclease family protein, expressed
LOC_Os01g19440OsAffx.11114.1.S1_x_at11/111+10994371..10996072Pectinesterase family protein
LOC_Os01g19440OsAffx.11114.1.S1_at11/111+10994371..10996072Pectinesterase family protein
LOC_Os01g19450Os.8730.1.S1_at11/111+10996114..11002756ATP-citrate synthase subunit 1, putative, expressed
LOC_Os01g19460OsAffx.11115.3.S1_x_at11/111+11011027..11017142hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11114.1.S1_at--885--3631Chr01:10995162..10995181 (20 bp)
CTTCAAGAACACGTACGGGAGGATG
LOC_Os01g19440
OsAffx.11114.1.S1_at--1100--3471Chr01:10995251..10995275 (25 bp)
CAGGACACGCTGAGCGACCTGCTGG
LOC_Os01g19440
OsAffx.11114.1.S1_at--108--1771Chr01:10995267..10995291 (25 bp)
ACCTGCTGGGGAGGCACTACTACGA
LOC_Os01g19440
OsAffx.11114.1.S1_at--1000--1651Chr01:10995291..10995315 (25 bp)
AGCGCTGCTACGTCGAGGGCGCCGT
LOC_Os01g19440
OsAffx.11114.1.S1_at--322--5811Chr01:10995425..10995449 (25 bp)
GACGCGAGCGGGTTCGTGTTCACCT
LOC_Os01g19440
OsAffx.11114.1.S1_at--39--7432Chr01:10995440..10995464 (25 bp)
GTGTTCACCTCGTGCACCGTCGGCG
LOC_Os01g19440
OsAffx.11114.1.S1_at--1050--4551Chr01:10995506..10995530 (25 bp)
GCGCGCGTCGTGTTCTACCGGACAG
LOC_Os01g19440
OsAffx.11114.1.S1_at--558--4011Chr01:10995511..10995535 (25 bp)
CGTCGTGTTCTACCGGACAGCCATG
LOC_Os01g19440
OsAffx.11114.1.S1_at--20--7431Chr01:10995515..10995539 (25 bp)
GTGTTCTACCGGACAGCCATGTCCG
LOC_Os01g19440
OsAffx.11114.1.S1_at--1129--8331Chr01:10995557..10995581 (25 bp)
GGCTGGGACGCCTGGGACTACAAGG
LOC_Os01g19440
OsAffx.11114.1.S1_at--237--1991Chr01:10995573..10995921 (25 bp)
ACTACAAGGGCAAAGAGGAGACGCT
LOC_Os01g19440
Target Sequence 
CTTCAAGAACACGTACGGGAGGATGGCGCCGGCGGTGGCGGCGCTGGTGGCCGGAGACCGGTCGGCGTTCTACCGGTGCG
GCTTCGTGGGGCTGCAGGACACGCTGAGCGACCTGCTGGGGAGGCACTACTACGAGCGCTGCTACGTCGAGGGCGCCGTC
GACTTCATCTTCGGGGAAGCCCAGTCCATCTTCCACCGCTGCCACATCTCCACCGCGGCGGCGGCGGCGCCCGGGTTCAT
CACGGCGCAGGGCCGGAGCAGCGCGTCCGACGCGAGCGGGTTCGTGTTCACCTCGTGCACCGTCGGCGGCGCCGCCCCGG
CGTACCTGGGCCGCGCGTGGCGTGCCTACGCGCGCGTCGTGTTCTACCGGACAGCCATGTCCGCCGCCGTCGTCGGCCTC
GGCTGGGACGCCTGGGACTACAAGGGCAAAGAGGAGACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis