Browse Element(s) Details


OsAffx.11130.1.S1_at

Description tigr:9629.m01981
TID=OsAffx.11130.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2081011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20770OsAffx.23312.1.S1_s_at11/111+11563494..11564331hypothetical protein
LOC_Os01g20770Os.5377.2.S1_x_at1/111+11563494..11564331hypothetical protein
LOC_Os01g20780Os.40421.1.S1_at9/111+11568088..11568986expressed protein
LOC_Os01g20800NANA1+11573707..11573958hypothetical protein
LOC_Os01g20810OsAffx.11130.1.S1_at11/111+11578112..11578815hypothetical protein
LOC_Os01g20820OsAffx.22910.1.S1_at3/111+11582418..11583054hypothetical protein
LOC_Os01g20830Os.38381.1.S1_at11/111+11593565..11595186heavy metal-associated domain containing protein, expressed
LOC_Os01g20840Os.16542.1.S1_s_at11/111+11600816..11605016lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11130.1.S1_at--402--1571Chr01:11578753..11578777 (25 bp)
AGCTATGCTAGCTGACTACTTCCCT
LOC_Os01g20810
OsAffx.11130.1.S1_at--588--8951Chr01:11578746..11578765 (20 bp)
TGACTACTTCCCTCGTGAACTCGAT
LOC_Os01g20810
OsAffx.11130.1.S1_at--400--7351Chr01:11578452..11578751 (25 bp)
GTGAACTCGATCTTGCTACCGTAGT
LOC_Os01g20810
OsAffx.11130.1.S1_at--561--9391Chr01:11578446..11578470 (25 bp)
TCGATCTTGCTACCGTAGTTGCCTT
LOC_Os01g20810
OsAffx.11130.1.S1_at--31--10051Chr01:11578431..11578455 (25 bp)
TAGTTGCCTTCCTCTTTGCTGACCT
LOC_Os01g20810
OsAffx.11130.1.S1_at--730--3111Chr01:11578402..11578426 (25 bp)
AATTTCGGTGGTCCCATAACCTCAT
LOC_Os01g20810
OsAffx.11130.1.S1_at--1143--2171Chr01:11578369..11578393 (25 bp)
ACACTCTCATTGATGCCCTCTGATC
LOC_Os01g20810
OsAffx.11130.1.S1_at--476--6351Chr01:11578358..11578382 (25 bp)
GATGCCCTCTGATCTGGTGAGTGAA
LOC_Os01g20810
OsAffx.11130.1.S1_at--461--3331Chr01:11578314..11578338 (25 bp)
CACTGTTGACATTAGGGAAGGCATC
LOC_Os01g20810
OsAffx.11130.1.S1_at--422--5292Chr03:17646799..17646859 (24 bp)
GAAGGCATCGATTGGTTCTCTGGCG
NONE
OsAffx.11130.1.S1_at--241--6611Chr01:11578289..11578313 (25 bp)
GATTGGTTCTCTGGCGATCGGAGAT
LOC_Os01g20810
Target Sequence 
AGCTATGCTAGCTGACTACTTCCCTCGTGAACTCGATCTTGCTACCGTAGTTGCCTTCCTCTTTGCTGACCTCACCAATT
TCGGTGGTCCCATAACCTCATCGTCCACCACACTCTCATTGATGCCCTCTGATCTGGTGAGTGAAGGGGAAAAAAGATGG
AAGACACTGTTGACATTAGGGAAGGCATCGATTGGTTCTCTGGCGATCGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis