Browse Element(s) Details


OsAffx.11140.1.S1_at

Description tigr:9629.m02031
TID=OsAffx.11140.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2127011/11hypothetical protein
LOC_Os09g069202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g069101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21240OsAffx.11139.1.S1_at11/111+11838033..11841455NB-ARC domain containing protein, expressed
LOC_Os01g21250Os.2915.1.S1_at1/111+11846401..11846813Late embryogenesis abundant protein
LOC_Os01g21260NANA1+11860826..11861984hypothetical protein
LOC_Os01g21270OsAffx.11140.1.S1_at11/111+11862345..11864165hypothetical protein
LOC_Os01g21280Os.17805.1.S3_s_at11/111+11865489..11867693hypothetical protein
LOC_Os01g21290Os.40360.1.S1_at9/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.5.S1_x_at8/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.2.S1_x_at8/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40360.1.S1_x_at6/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.4.S1_x_at3/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.4.S1_at1/111+11869336..11872539hypothetical protein
LOC_Os01g21300Os.57035.1.S1_at11/111+11880039..11884875Phospholipase, putative, expressed
LOC_Os01g21310Os.45878.1.S1_at11/111+11887890..11889916esterase/lipase/thioesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11140.1.S1_at--76--1271Chr01:11863189..11863213 (25 bp)
AGATTTTGACTCTATCCGTACTCGG
LOC_Os01g21270
OsAffx.11140.1.S1_at--752--9532Chr01:11863229..11863253 (25 bp)
TCTACTCTAACCATGGCACTAGCAT
LOC_Os01g21270
OsAffx.11140.1.S1_at--373--8251Chr01:11863243..11863267 (25 bp)
GGCACTAGCATTGTCTGATTTACTT
LOC_Os01g21270
OsAffx.11140.1.S1_at--780--6532Chr01:11863259..11863283 (25 bp)
GATTTACTTGCTGAGGAGACACGCC
LOC_Os01g21270
OsAffx.11140.1.S1_at--441--9571Chr01:11863335..11863358 (24 bp)
TCTTCTCAGAGGTTTGGCACATCCA
LOC_Os01g21270
OsAffx.11140.1.S1_at--716--1331Chr01:11863358..11863379 (22 bp)
AGAGGTACCTCTTCAGTGCCTTAAA
LOC_Os01g21270
OsAffx.11140.1.S1_at--651--7271Chr01:11863373..11863793 (25 bp)
GTGCCTTAAAACAATTGCTCTCCAG
LOC_Os01g21270
OsAffx.11140.1.S1_at--1009--9091Chr01:11863784..11863808 (25 bp)
TGCTCTCCAGTATGTGTCCTCAGAA
LOC_Os01g21270
OsAffx.11140.1.S1_at--78--2552Chr01:11863841..11863865 (25 bp)
AACTCGTGAGCAGCATCGTTTCACT
LOC_Os01g21270
OsAffx.11140.1.S1_at--1117--2051Chr01:11863863..11863887 (25 bp)
ACTTGCTCAAACTCAGTGCTTCAGA
LOC_Os01g21270
OsAffx.11140.1.S1_at--372--891Chr01:11863940..11863964 (25 bp)
AGGCCTAGCCCATATAGTCCATGAG
LOC_Os01g21270
Target Sequence 
AGATTTTGACTCTATCCGTACTCGGCTGCTTCACAGTTCCTCTACTCTAACCATGGCACTAGCATTGTCTGATTTACTTG
CTGAGGAGACACGCCTCAAATCTCTACCTGCACCAGCTCTTCTCAGAGGTTTGGCACATCCAGAGGTACCTCTTCAGTGC
CTTAAAACAATTGCTCTCCAGTATGTGTCCTCAGAACTGAAAGTCGCAGACTTTTTCACTAAAGCACAAACTCGTGAGCA
GCATCGTTTCACTTGCTCAAACTCAGTGCTTCAGATCCTCCACTTCTGCCTTGAGTTTGAAGAGGGGTGTTATGTATATC
TATATCAAGGCCTAGCCCATATAGTCCATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis