Browse Element(s) Details


OsAffx.11157.1.S1_at

Description gb:NM_183828.1
DB_XREF= gi:34894783
GEN=P0537A05.19
TID=OsAffx.11157.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0537A05.19 (P0537A05.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g224403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22400NANA1+12578413..12579776F-box domain containing protein, expressed
LOC_Os01g22410NANA1+12582249..12585485transposon protein, putative, unclassified
LOC_Os01g22420NANA1+12586116..12592274transposon protein, putative, unclassified
LOC_Os01g22430Os.27350.1.A1_at6/111+12597767..12599726F-box domain containing protein
LOC_Os01g22440OsAffx.11157.1.S1_at3/111+12603727..12604185hypothetical protein
LOC_Os01g22450OsAffx.11158.1.S1_at8/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_x_at5/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_at4/111+12610507..12612419hypothetical protein
LOC_Os01g22480Os.33000.1.S1_x_at11/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22480Os.33000.1.S2_at10/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22490Os.28209.2.S1_at11/111+12628070..12628889ubiquitin, putative, expressed
LOC_Os01g22500Os.1574.1.S1_at11/111+12629067..12632493Bucentaur or craniofacial development family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11157.1.S1_at--348--51Chr01:12604114..12604138 (25 bp)
ATTGACCAGGAGAGGCACTGCCAAT
LOC_Os01g22440
OsAffx.11157.1.S1_at--781--3191Chr01:12604135..12604159 (25 bp)
CAATCCACTGAATCGGGCATCGCCG
LOC_Os01g22440
OsAffx.11157.1.S1_at--896--531Chr01:12604153..12604177 (25 bp)
ATCGCCGCTGCTAAGTTCAAGCTGC
LOC_Os01g22440
OsAffx.11157.1.S1_at--273--4571NONE
GCGCGCCACCATCGCTAGAAAGGTA
NONE
OsAffx.11157.1.S1_at--563--10011Chr01:12605719..12605743 (25 bp)
TAGAAAGGTACACGCCGAGCACCGG
NONE
OsAffx.11157.1.S1_at--943--8311Chr01:12605753..12605777 (25 bp)
GGCTCGAGGTGCACCACCGGAGAAA
NONE
OsAffx.11157.1.S1_at--350--1771Chr01:12605768..12605792 (25 bp)
ACCGGAGAAAGCCACTCAGACTCAA
NONE
OsAffx.11157.1.S1_at--132--6311Chr01:12605877..12605901 (25 bp)
GATGAGATCGTTCTCTGCCATGGAC
NONE
OsAffx.11157.1.S1_at--230--851Chr01:12605896..12605920 (25 bp)
ATGGACTCCAGGCTTCTCCTTTTCG
NONE
OsAffx.11157.1.S1_at--752--3631Chr01:12605914..12606283 (25 bp)
CTTTTCGGCACCGACGGGAGGCTGA
NONE
OsAffx.11157.1.S1_at--484--1592Chr01:12606297..12606321 (25 bp)
AGCTCGAGGGCCAGCACCGACAGCG
NONE
Target Sequence 
ATTGACCAGGAGAGGCACTGCCAATCCACTGAATCGGGCATCGCCGCTGCTAAGTTCAAGCTGCAGACGTNNATAGGGCA
TATGAGAAGGGCGGGCGGAAGGGGGAGTGAAGCGGAGGGTGGAGATGGGTCGTCACGGATGGAGACTGAGAAGGACGATG
GCGTGGAGAACTGCGCGCCACCATCGCTAGAAAGGTACACGCCGAGCACCGGCACCGACGCGGCTCGAGGTGCACCACCG
GAGAAAGCCACTCAGACTCAACCCCAGCCTCCTACCGCCCCCTCCGCCTTTCCCCCCTCCCGTCCCGTCCACACCAAGCT
GCAGGGCGCCCGCGACAAGATGGTGGATGAGATCGTTCTCTGCCATGGACTCCAGGCTTCTCCTTTTCGGCACCGACGGG
AGGCTGAGGAGCCCGCGGCGAGCTCGAGGGCCAGCACCGACAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis