Browse Element(s) Details


OsAffx.11225.1.S1_at

Description tigr:9629.m02611
TID=OsAffx.11225.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2733011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27280NANA1+15549971..15557101retrotransposon protein, putative, unclassified
LOC_Os01g27289NANA1+15557963..15558143NA
LOC_Os01g27300OsAffx.11224.1.S1_at11/111+15561311..15561559glutathione S-transferase GSTF1, putative
LOC_Os01g27320Os.45173.1.S1_x_at2/111+15572320..15578753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27320Os.47371.1.S1_at1/111+15572320..15578753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27320Os.9523.1.S1_at1/111+15572320..15578753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27330OsAffx.11225.1.S1_at11/111+15580407..15581775hypothetical protein
LOC_Os01g27340Os.40662.1.S1_at11/111+15585714..15587153glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27350NANA1+15603150..156036022-hydroxyisoflavanone dehydratase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11225.1.S1_at--89--3252Chr10:13371816..13371864 (25 bp)
CAAGCGAGCTTTAGGTCACCACATT
NONE
OsAffx.11225.1.S1_at--772--9671Chr01:15581697..15581721 (25 bp)
TCACCACATTTTGACGCTCTAACAA
LOC_Os01g27330
OsAffx.11225.1.S1_at--23--5811Chr01:15581685..15581709 (25 bp)
GACGCTCTAACAACTGGCACAGATA
LOC_Os01g27330
OsAffx.11225.1.S1_at--1137--3871Chr01:15581554..15581575 (22 bp)
CTGTCGAGGAAGTCGGCTCCAGCCG
LOC_Os01g27330
OsAffx.11225.1.S1_at--861--1151Chr01:15580612..15580636 (25 bp)
AGTCTCTCAGAGTCCAACATTCTTT
LOC_Os01g27330
OsAffx.11225.1.S1_at--870--2071Chr01:15580596..15580620 (25 bp)
ACATTCTTTTGTCCTTGTAGCACTC
LOC_Os01g27330
OsAffx.11225.1.S1_at--557--3331Chr01:15580576..15580600 (25 bp)
CACTCCGGAGTGTCAATTGTAGGCT
LOC_Os01g27330
OsAffx.11225.1.S1_at--1001--9851Chr01:15580552..15580576 (25 bp)
TACAACAAGTTGGTCTCCACCTCAT
LOC_Os01g27330
OsAffx.11225.1.S1_at--62--1551Chr01:15580486..15580510 (25 bp)
AGCATAGACAGCTCTCGCACCTTTT
LOC_Os01g27330
OsAffx.11225.1.S1_at--493--4091Chr01:15580471..15580495 (25 bp)
CGCACCTTTTTCAGCAACCTAGAAG
LOC_Os01g27330
OsAffx.11225.1.S1_at--641--5931Chr01:15580447..15580471 (25 bp)
GAGCACCTCTTATATGTGGACCACC
LOC_Os01g27330
Target Sequence 
CAAGCGAGCTTTAGGTCACCACATTTTGACGCTCTAACAACTGGCACAGATAATGGCGATATGCAGGATCAACGATCATG
GGCGATGACAACAAAACATGACATGATGGCGAGAGTGGTTGGCGCTTCAGCACCTCGAGGAGCATTTGGGGGCCCAAGGA
GCTGTCGAGGAAGTCGGCTCCAGCCGGAGGAGTCTCTCAGAGTCCAACATTCTTTTGTCCTTGTAGCACTCCGGAGTGTC
AATTGTAGGCTACAACAAGTTGGTCTCCACCTCATCATCTATGTTGTACAAGATGACATGGGCTGGGACATTGAAGAGCA
TAGACAGCTCTCGCACCTTTTTCAGCAACCTAGAAGAGCACCTCTTATATGTGGACCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis