Browse Element(s) Details


Os.40662.1.S1_at

Description gb:NM_193836.1
DB_XREF= gi:34914755
GEN=P0493G01.17
TID=Os.40662.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40662 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (P0493G01.17), mRNA.
PROD=putative glutathione S-transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2734011/11glutathione S-transferase GSTF1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27300OsAffx.11224.1.S1_at11/111+15561311..15561559glutathione S-transferase GSTF1, putative
LOC_Os01g27320Os.45173.1.S1_x_at2/111+15572320..15578753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27320Os.47371.1.S1_at1/111+15572320..15578753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27320Os.9523.1.S1_at1/111+15572320..15578753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27330OsAffx.11225.1.S1_at11/111+15580407..15581775hypothetical protein
LOC_Os01g27340Os.40662.1.S1_at11/111+15585714..15587153glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27350NANA1+15603150..156036022-hydroxyisoflavanone dehydratase, putative
LOC_Os01g27360Os.25651.1.S1_at11/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27360Os.47136.1.A1_x_at3/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27370OsAffx.23415.1.S1_at11/111+15610938..15612683hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009407biological_processtoxin catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005792cellular_componentmicrosome
GO:0005886cellular_componentplasma membrane
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40662.1.S1_at--1140--3231Chr01:15586846..15586952 (25 bp)
CAAGCGCAACCCGTTTGGTCAAATG
LOC_Os01g27340
Os.40662.1.S1_at--1162--10851Chr01:15586832..15586856 (25 bp)
TTGGTCAAATGCCAGCTTTCCAGGA
LOC_Os01g27340
Os.40662.1.S1_at--964--1131Chr01:15586153..15586177 (25 bp)
AGTCCCGCGCGGTAGGAAGGTACAT
LOC_Os01g27340
Os.40662.1.S1_at--568--2931Chr01:15586087..15586111 (25 bp)
AAGGCAACCTGACTGAGGCGGCCAT
LOC_Os01g27340
Os.40662.1.S1_at--442--1171Chr01:15586030..15586054 (25 bp)
AGTACTATCCGGTGATCTCGTCGAT
LOC_Os01g27340
Os.40662.1.S1_at--935--7211Chr01:15586011..15586035 (25 bp)
GTCGATCGTGTATGAATGCCTCTTC
LOC_Os01g27340
Os.40662.1.S1_at--97--3911Chr01:15585914..15585938 (25 bp)
CTGGAGGTGTATGAGGCCCGTCTAT
LOC_Os01g27340
Os.40662.1.S1_at--941--4531Chr01:15585899..15585923 (25 bp)
GCCCGTCTATCGCAGAATACGTATT
LOC_Os01g27340
Os.40662.1.S1_at--350--1891Chr01:15585881..15585905 (25 bp)
ACGTATTTGGCTGGCAATTTCCTCA
LOC_Os01g27340
Os.40662.1.S1_at--1153--3111Chr01:15585866..15585890 (25 bp)
AATTTCCTCAGCTTTGTGGACCTCA
LOC_Os01g27340
Os.40662.1.S1_at--570--3911Chr01:15585748..15585772 (25 bp)
CGGCGAGGCCCTCCATAAAGAAGGT
LOC_Os01g27340
Target Sequence 
CAAGCGCAACCCGTTTGGTCAAATGCCAGCTTTCCAGGACGGGGATCTGCTTCTCTTCGAGTCCCGCGCGGTAGGAAGGT
ACATCCTTCGCAAGTACAAGACCAGCGAGGCCAACCTACTGCGGGAAGGCAACCTGACTGAGGCGGCCATGGTGGACATC
GGGATCGAGGTGGAGATACACCAGTACTATCCGGTGATCTCGTCGATCGTGTATGAATGCCTCTTCAACCCGGCCATGTA
CGGTGTCCCGACCAACCAAAAGGTGGTCGATAATAGCCTGGAGAAGCTGAAGAAAGTGCTGGAGGTGTATGAGGCCCGTC
TATCGCAGAATACGTATTTGGCTGGCAATTTCCTCAGCTTTGTGGACCTCAGCCACTTCCCCTTCACCTTCTACTTCATG
GCGACGCCNTACGCTTCACTACTCGACNAGTACCCTCATGTGAAGGCATGGTGGGATGGGCTCGCGGCGAGGCCCTCCAT
AAAGAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis