Browse Element(s) Details


OsAffx.23415.1.S1_at

Description tigr:9629.m02615
TID=OsAffx.23415.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2737011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27340Os.40662.1.S1_at11/111+15585714..15587153glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27350NANA1+15603150..156036022-hydroxyisoflavanone dehydratase, putative
LOC_Os01g27360Os.25651.1.S1_at11/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27360Os.47136.1.A1_x_at3/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27370OsAffx.23415.1.S1_at11/111+15610938..15612683hypothetical protein
LOC_Os01g27380OsAffx.23416.1.S1_s_at11/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27380OsAffx.23416.1.S1_at9/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27390Os.36663.1.S1_at11/111+15618535..15621275glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27400OsAffx.11226.1.S1_at11/111+15623829..15625998hypothetical protein
LOC_Os01g27410NANA1+15626643..15626939hypothetical protein
LOC_Os01g27420OsAffx.19542.3.S1_x_at7/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27420OsAffx.21754.1.S1_x_at1/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27430OsAffx.29396.4.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.2.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430Os.31929.3.S1_x_at2/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.5.S1_x_at1/111+15635934..15639882hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23415.1.S1_at--348--8631Chr01:15612621..15612642 (22 bp)
TGGTGGAATCAACTTATCCAGGAGC
LOC_Os01g27370
OsAffx.23415.1.S1_at--280--10151Chr01:15611497..15611519 (23 bp)
TATCCAGGAGCCACGACATCACAGA
LOC_Os01g27370
OsAffx.23415.1.S1_at--87--371Chr01:15611480..15611504 (25 bp)
ATCACAGAAAGGTCCAACGGCAACG
LOC_Os01g27370
OsAffx.23415.1.S1_at--911--10071Chr01:15611374..15611398 (25 bp)
TAGGGTGCCGCCTGCCCCGAGAAGC
LOC_Os01g27370
OsAffx.23415.1.S1_at--525--5971Chr01:15611356..15611380 (25 bp)
GAGAAGCTGCTCCTTGTCTTCATCC
LOC_Os01g27370
OsAffx.23415.1.S1_at--1072--3411Chr01:15611320..15611344 (25 bp)
CAGACCCTGCGCATGGGCTCGTGGA
LOC_Os01g27370
OsAffx.23415.1.S1_at--119--9191Chr01:15611237..15611261 (25 bp)
TGCCGGGAGCTGCACTTACAGTCGT
LOC_Os01g27370
OsAffx.23415.1.S1_at--928--2031Chr01:15611224..15611248 (25 bp)
ACTTACAGTCGTGCAGCTTCAGCCA
LOC_Os01g27370
OsAffx.23415.1.S1_at--1087--3391Chr01:15611088..15611112 (25 bp)
CAGCTTCTCTGGGTGGGTGATGCCC
LOC_Os01g27370
OsAffx.23415.1.S1_at--1139--7391Chr01:15611072..15611096 (25 bp)
GTGATGCCCGTGTGGAGCCCGTCCC
LOC_Os01g27370
OsAffx.23415.1.S1_at--1057--8531Chr01:15610981..15611005 (25 bp)
TGGACCTCCCCGAGATGCTGTGGCG
LOC_Os01g27370
Target Sequence 
TGGTGGAATCAACTTATCCAGGAGCCACGACATCACAGAAAGGTCCAACGGCAACGGCCAACGACGCGACGGCAGCGGTG
ACGCAGGACAAGGGCAGGGTGTCCGCGGCGGGAGCGTTGGTGGAGGGGCTCTGTGCGTAGGGTGCCGCCTGCCCCGAGAA
GCTGCTCCTTGTCTTCATCCGGGCACTGACGCAGACCCTGCGCATGGGCTCGTGGAGGAGTTCAAGGCCGCGGCACCGCC
CGTCTCCGACGAGCTGGAGTTCTCGTGGGCGCAGTGCCGGGAGCTGCACTTACAGTCGTGCAGCTTCAGCCACCTCGCCC
TCGCGAGCTCCAGTTCGTCGGAGTTGGGCGGCGCCGTGGCCCCGAACTCCTCCACGAGCCCCTGCGCAGGGTCTGCGCCA
ACGCCGCGGGCAAAGACAAAGAGCAGCTTCTCTGGGTGGGTGATGCCCGTGTGGAGCCCGTCCCAAGCGCTCCAACCGCC
GACGCCCTACCCTCCATGTCGTCGTCGTTGCCATCGCCCGCCGCCTCCACTGGACCTCCCCGAGATGCTGTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis