Browse Element(s) Details


OsAffx.29396.2.S1_x_at

Description gb:NM_193844.1
DB_XREF= gi:34914771
GEN=P0493G01.28
TID=OsAffx.29396.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0493G01.28 (P0493G01.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2743011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27370OsAffx.23415.1.S1_at11/111+15610938..15612683hypothetical protein
LOC_Os01g27380OsAffx.23416.1.S1_s_at11/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27380OsAffx.23416.1.S1_at9/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27390Os.36663.1.S1_at11/111+15618535..15621275glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27400OsAffx.11226.1.S1_at11/111+15623829..15625998hypothetical protein
LOC_Os01g27410NANA1+15626643..15626939hypothetical protein
LOC_Os01g27420OsAffx.19542.3.S1_x_at7/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27420OsAffx.21754.1.S1_x_at1/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27430OsAffx.29396.4.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.2.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430Os.31929.3.S1_x_at2/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.5.S1_x_at1/111+15635934..15639882hypothetical protein
LOC_Os01g27440Os.17546.2.S1_x_at1/111+15643761..15650064retrotransposon protein, putative, unclassified
LOC_Os01g27450OsAffx.20451.1.S1_at1/111+15659363..15660813hypothetical protein
LOC_Os01g27459NANA1+15661976..15662155NA
LOC_Os01g27470OsAffx.21134.1.S1_at11/111+15663396..15664454Ubiquitin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29396.2.S1_x_at--64--3371Chr01:15638821..15638845 (25 bp)
CACCGAGTCCGCGAAGATGGCGTGC
LOC_Os01g27430
OsAffx.29396.2.S1_x_at--408--6111Chr01:15638825..15638849 (25 bp)
GAGTCCGCGAAGATGGCGTGCCAAA
LOC_Os01g27430
OsAffx.29396.2.S1_x_at--690--4151Chr01:15638830..15638854 (25 bp)
CGCGAAGATGGCGTGCCAAACACTT
LOC_Os01g27430
OsAffx.29396.2.S1_x_at--374--4311Chr01:15638863..15638885 (23 bp)
CCTTTCCGACATGGAGGCGAGGGCC
LOC_Os01g27430
OsAffx.29396.2.S1_x_at--954--6111Chr01:15638944..15638965 (22 bp)
GAGGGCCGGTGGTGCGGTCTCGGAC
LOC_Os01g27430
OsAffx.29396.2.S1_x_at--687--8631Chr01:15639018..15639042 (25 bp)
TGGGCTTTCTGCAACCGTTCGGCTA
LOC_Os01g27430
OsAffx.29396.2.S1_x_at--1110--10291Chr01:15639023..15639047 (25 bp)
TTTCTGCAACCGTTCGGCTACGAGC
LOC_Os01g27430
OsAffx.29396.2.S1_x_at--771--7111Chr01:15639089..15639113 (25 bp)
GTCAGTGCACAGGACATTTCGCCCG
LOC_Os01g27430
OsAffx.29396.2.S1_x_at--891--4891Chr01:15639115..15639139 (25 bp)
GCTTCACGCCTGGCGAAAACAGTTA
LOC_Os01g27430
OsAffx.29396.2.S1_x_at--792--2931Chr01:15639167..15639191 (25 bp)
AAGGCGCGTCTTCTTGAGCAACTAG
LOC_Os01g27430
OsAffx.29396.2.S1_x_at--154--9571Chr01:15639175..15639199 (25 bp)
TCTTCTTGAGCAACTAGCGAAGGCT
LOC_Os01g27430
Target Sequence 
CACCGAGTCCGCGAAGATGGCGTGCCAAACACTTCGCCTTGCCCTTTCCGACATGGAGGCGAGGGCCGGTGGTGCGGTCT
CGGACTGCGCCACTGCGTACGGCGATTGCTGTGCACGCGTGTCGGCGGCCTTCACCATGGGCTTTCTGCAACCGTTCGGC
TACGAGCACGTCGCCGAGTTCCCTAACTATGCGAAGGGGGACTGGGAGGTCAGTGCACAGGACATTTCGCCCGCGCTTCA
CGCCTGGCGAAAACAGTTATGGCAGAAGGACGGCCGATCCACCGCCAAGGCGCGTCTTCTTGAGCAACTAGCGAAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29396.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis