Browse Element(s) Details


OsAffx.11226.1.S1_at

Description tigr:9629.m02618
TID=OsAffx.11226.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2740011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27350NANA1+15603150..156036022-hydroxyisoflavanone dehydratase, putative
LOC_Os01g27360Os.25651.1.S1_at11/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27360Os.47136.1.A1_x_at3/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27370OsAffx.23415.1.S1_at11/111+15610938..15612683hypothetical protein
LOC_Os01g27380OsAffx.23416.1.S1_s_at11/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27380OsAffx.23416.1.S1_at9/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27390Os.36663.1.S1_at11/111+15618535..15621275glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27400OsAffx.11226.1.S1_at11/111+15623829..15625998hypothetical protein
LOC_Os01g27410NANA1+15626643..15626939hypothetical protein
LOC_Os01g27420OsAffx.19542.3.S1_x_at7/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27420OsAffx.21754.1.S1_x_at1/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27430OsAffx.29396.4.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.2.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430Os.31929.3.S1_x_at2/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.5.S1_x_at1/111+15635934..15639882hypothetical protein
LOC_Os01g27440Os.17546.2.S1_x_at1/111+15643761..15650064retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11226.1.S1_at--415--3171Chr01:15624084..15624108 (25 bp)
AATTGAACTGTTGTCGGAGCTGAAT
LOC_Os01g27400
OsAffx.11226.1.S1_at--417--2491Chr01:15624052..15624076 (25 bp)
AACAGCAAACTGTGGCGTCGGTGGC
LOC_Os01g27400
OsAffx.11226.1.S1_at--84--8331Chr01:15624030..15624054 (25 bp)
GGCTGCGAAGCCACATAGCGGACCA
LOC_Os01g27400
OsAffx.11226.1.S1_at--18--10011Chr01:15624015..15624039 (25 bp)
TAGCGGACCATCGTGGGCTGAGAAA
LOC_Os01g27400
OsAffx.11226.1.S1_at--791--10031Chr01:15623979..15624003 (25 bp)
TAGAGCTGCTGCTACTTGCATCTTT
LOC_Os01g27400
OsAffx.11226.1.S1_at--248--10711Chr01:15623964..15623988 (25 bp)
TTGCATCTTTTCTGGCTACCCACTT
LOC_Os01g27400
OsAffx.11226.1.S1_at--380--2051Chr01:15623943..15623967 (25 bp)
ACTTCCATTTGCGATCCTCAAGAAC
LOC_Os01g27400
OsAffx.11226.1.S1_at--1102--9711Chr01:15623926..15623950 (25 bp)
TCAAGAACTTCCTTTTCACTGGCTT
LOC_Os01g27400
OsAffx.11226.1.S1_at--13--10371Chr01:15623914..15623938 (25 bp)
TTTTCACTGGCTTCCACACGAAGAG
LOC_Os01g27400
OsAffx.11226.1.S1_at--746--2171Chr01:15623899..15623923 (25 bp)
ACACGAAGAGCCTTGTCAGCCAGAG
LOC_Os01g27400
OsAffx.11226.1.S1_at--515--7111Chr01:15623885..15623909 (25 bp)
GTCAGCCAGAGTCTTCATGCTAGAA
LOC_Os01g27400
Target Sequence 
AATTGAACTGTTGTCGGAGCTGAATGATGGGAAACAGCAAACTGTGGCGTCGGTGGCTGCGAAGCCACATAGCGGACCAT
CGTGGGCTGAGAAAGGCGCATCGGGTAGAGCTGCTGCTACTTGCATCTTTTCTGGCTACCCACTTCCATTTGCGATCCTC
AAGAACTTCCTTTTCACTGGCTTCCACACGAAGAGCCTTGTCAGCCAGAGTCTTCATGCTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis