Browse Element(s) Details


Os.47136.1.A1_x_at

Description gb:CF293584
DB_XREF= gi:33662617
DB_XREF=30DGS--02-N05.g1
CLONE=30DGS--02-N05
TID=Os.47136.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47136 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g273603/11glutathione S-transferase GSTF1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27340Os.40662.1.S1_at11/111+15585714..15587153glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27350NANA1+15603150..156036022-hydroxyisoflavanone dehydratase, putative
LOC_Os01g27360Os.25651.1.S1_at11/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27360Os.47136.1.A1_x_at3/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27370OsAffx.23415.1.S1_at11/111+15610938..15612683hypothetical protein
LOC_Os01g27380OsAffx.23416.1.S1_s_at11/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27380OsAffx.23416.1.S1_at9/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27390Os.36663.1.S1_at11/111+15618535..15621275glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27400OsAffx.11226.1.S1_at11/111+15623829..15625998hypothetical protein
LOC_Os01g27410NANA1+15626643..15626939hypothetical protein
LOC_Os01g27420OsAffx.19542.3.S1_x_at7/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27420OsAffx.21754.1.S1_x_at1/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009407biological_processtoxin catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47136.1.A1_x_at--686--8491NONE
TGGCATGATTGTGCAATTTTTTGGG
NONE
Os.47136.1.A1_x_at--604--171NONE
ATTTTTTGGGCGGTTCAGCATGTTC
NONE
Os.47136.1.A1_x_at--736--10351NONE
TTTTTTGGGCGGTTCAGCATGTTCG
NONE
Os.47136.1.A1_x_at--949--10351NONE
TTTTTGGGCGGTTCAGCATGTTCGG
NONE
Os.47136.1.A1_x_at--25--10231Chr01:15608044..15608064 (21 bp)
TTTGGGCGGTTCAGCATGTTCGGTT
LOC_Os01g27360
Os.47136.1.A1_x_at--112--10831Chr01:15608043..15608064 (22 bp)
TTGGGCGGTTCAGCATGTTCGGTTT
LOC_Os01g27360
Os.47136.1.A1_x_at--759--7571NONE
GGGCGGTTCAGCATGTTCGGTTTTT
NONE
Os.47136.1.A1_x_at--704--4671Chr01:15608043..15608063 (21 bp)
GCGGTTCAGCATGTTCGGTTTTTGG
LOC_Os01g27360
Os.47136.1.A1_x_at--710--7891Chr01:15607656..15608061 (25 bp)
GGTTCAGCATGTTCGGTTTTTGGTT
NONE
Os.47136.1.A1_x_at--181--9631NONE
TCAGCATGTTCGGTTTTTGGTTTAA
NONE
Os.47136.1.A1_x_at--516--8571NONE
TGGTTTAAATCCCAATGGGCAAATT
NONE
Target Sequence 
TGGCATGATTGTGCAATTTTTTGGGCGGTTCAGCATGTTCGGTTTTTGGTTTAAATCCCAATGGGCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47136.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis