Browse Element(s) Details


OsAffx.23416.1.S1_s_at

Description gb:NM_193841.1
DB_XREF= gi:34914765
GEN=P0493G01.22
TID=OsAffx.23416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (P0493G01.22), mRNA.
PROD=putative glutathione S-transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2738011/11glutathione S-transferase GSTF2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27350NANA1+15603150..156036022-hydroxyisoflavanone dehydratase, putative
LOC_Os01g27360Os.25651.1.S1_at11/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27360Os.47136.1.A1_x_at3/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27370OsAffx.23415.1.S1_at11/111+15610938..15612683hypothetical protein
LOC_Os01g27380OsAffx.23416.1.S1_s_at11/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27380OsAffx.23416.1.S1_at9/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27390Os.36663.1.S1_at11/111+15618535..15621275glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27400OsAffx.11226.1.S1_at11/111+15623829..15625998hypothetical protein
LOC_Os01g27410NANA1+15626643..15626939hypothetical protein
LOC_Os01g27420OsAffx.19542.3.S1_x_at7/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27420OsAffx.21754.1.S1_x_at1/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27430OsAffx.29396.4.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.2.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430Os.31929.3.S1_x_at2/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.5.S1_x_at1/111+15635934..15639882hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0006952biological_processdefense response
GO:0009407biological_processtoxin catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23416.1.S1_s_at--714--91Chr01:15617023..15617047 (25 bp)
ATTCGGTCAAGTTCCAGCTTTCCAA
LOC_Os01g27380
OsAffx.23416.1.S1_s_at--92--5311Chr01:15617788..15617812 (25 bp)
GAAGGAAAGCAACCTCTCGCAGTCT
LOC_Os01g27380
OsAffx.23416.1.S1_s_at--200--6651Chr01:15617840..15617864 (25 bp)
GTTGAGTCCCAAACTTTCGACACTG
LOC_Os01g27380
OsAffx.23416.1.S1_s_at--530--4431Chr01:15617864..15617888 (25 bp)
GCCATGTCAGCAATCACTTTCCAAT
LOC_Os01g27380
OsAffx.23416.1.S1_s_at--531--2651Chr01:15617964..15617988 (25 bp)
AAGCCCTTGAGGTTTACGAGGCACG
LOC_Os01g27380
OsAffx.23416.1.S1_s_at--1148--1831Chr01:15617986..15618010 (25 bp)
ACGCTCGTGCAGGTTCAGGTACTTG
LOC_Os01g27380
OsAffx.23416.1.S1_s_at--991--7011Chr01:15618004..15618028 (25 bp)
GTACTTGGCCGGTGATTTCATCAGC
LOC_Os01g27380
OsAffx.23416.1.S1_s_at--1054--1271Chr01:15618034..15618058 (25 bp)
AGATCTCAGCCATTTTCCTATGACG
LOC_Os01g27380
OsAffx.23416.1.S1_s_at--427--691Chr01:15618053..15618077 (25 bp)
ATGACGCACTACTTGTTAGCTACTC
LOC_Os01g27380
OsAffx.23416.1.S1_s_at--1149--6771Chr01:15618067..15618091 (25 bp)
GTTAGCTACTCCTCATGCATCAGTG
LOC_Os01g27380
OsAffx.23416.1.S1_s_at--766--4791Chr01:15618091..15618115 (25 bp)
GCTCGATGCATACCCACATGTGAAG
LOC_Os01g27380
Target Sequence 
ATTCGGTCAAGTTCCAGCTTTCCAAGATGGCGATCTTATCCTTTTCGGTAAGATATCTCTAGGGGAAAACTTAGTCTCGT
GCAATTGCAAAATATATACTCCACTTCGCAAAAGCGCATCAGACTTGCTGAAGGAAAGCAACCTCTCGCAGTCTGCAATA
ATGGTCGATGTGTGGCTCGAAGTTGAGTCCCAAACTTTCGACACTGCCATGTCAGCAATCACTTTCCAATGCTTAACAAT
ACCCACTTTCATGGGCGGAATTGCTGACGACAAAATCGTGGAGGAGAATTTGGGGAAACTGAAGAAAGCCCTTGAGGTTT
ACGAGGCACGCTCGTGCAGGTTCAGGTACTTGGCCGGTGATTTCATCAGCCTGGCAGATCTCAGCCATTTTCCTATGACG
CACTACTTGTTAGCTACTCCTCATGCATCAGTGCTCGATGCATACCCACATGTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23416.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis