Browse Element(s) Details


Os.36663.1.S1_at

Description gb:AK062937.1
DB_XREF= gi:32972955
TID=Os.36663.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutathione S-transferase (P0493G01.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-B04, full insert sequence.
FL= gb:AK062937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2739011/11glutathione S-transferase GSTF2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27350NANA1+15603150..156036022-hydroxyisoflavanone dehydratase, putative
LOC_Os01g27360Os.25651.1.S1_at11/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27360Os.47136.1.A1_x_at3/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27370OsAffx.23415.1.S1_at11/111+15610938..15612683hypothetical protein
LOC_Os01g27380OsAffx.23416.1.S1_s_at11/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27380OsAffx.23416.1.S1_at9/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27390Os.36663.1.S1_at11/111+15618535..15621275glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27400OsAffx.11226.1.S1_at11/111+15623829..15625998hypothetical protein
LOC_Os01g27410NANA1+15626643..15626939hypothetical protein
LOC_Os01g27420OsAffx.19542.3.S1_x_at7/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27420OsAffx.21754.1.S1_x_at1/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27430OsAffx.29396.4.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.2.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430Os.31929.3.S1_x_at2/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.5.S1_x_at1/111+15635934..15639882hypothetical protein
LOC_Os01g27440Os.17546.2.S1_x_at1/111+15643761..15650064retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0006952biological_processdefense response
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005792cellular_componentmicrosome
GO:0005886cellular_componentplasma membrane
GO:0009507cellular_componentchloroplast
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36663.1.S1_at--622--5951Chr01:15620682..15620706 (25 bp)
GAGCAACCTCTCTGAGTCTGCAATG
LOC_Os01g27390
Os.36663.1.S1_at--1119--6091Chr01:15620728..15620752 (25 bp)
GAGTCGAGCCATTTCGACGGCGCGA
LOC_Os01g27390
Os.36663.1.S1_at--240--10751Chr01:15620855..15620879 (25 bp)
TTGAAGTCTACGAGGCGCAGCTGTC
LOC_Os01g27390
Os.36663.1.S1_at--418--5072Chr05:18105039..18105059 (21 bp)
GCAGCTGTCCAAATCCAAGTACTTA
NONE
Os.36663.1.S1_at--891--231Chr01:15620921..15620945 (25 bp)
ATATCAGCCATTTCCCGACGGTTTA
LOC_Os01g27390
Os.36663.1.S1_at--744--5751Chr01:15620937..15620961 (25 bp)
GACGGTTTATTACCTGCTGGCATCT
LOC_Os01g27390
Os.36663.1.S1_at--166--4791Chr01:15620976..15621000 (25 bp)
GCTCGAAGCCTATCCGCGTGTGAAG
LOC_Os01g27390
Os.36663.1.S1_at--999--8311Chr01:15621051..15621075 (25 bp)
GGCTCTGAAGATGCCGTCTGCTTAA
LOC_Os01g27390
Os.36663.1.S1_at--832--5471Chr01:15621107..15621131 (25 bp)
GAACTCAATTTCAGCGTTGCGTGAC
LOC_Os01g27390
Os.36663.1.S1_at--1067--5051Chr01:15621137..15621161 (25 bp)
GCAGCAGTTTGCATCATCTGTATGA
LOC_Os01g27390
Os.36663.1.S1_at--1120--5011Chr01:15621204..15621228 (25 bp)
GCAGTGTAGCGCCTATATTTATGAG
LOC_Os01g27390
Target Sequence 
GAGCAACCTCTCTGAGTCTGCAATGGTGGATGTTTGGCTGGAAGTCGAGTCGAGCCATTTCGACGGCGCGATGTCGCCGA
TCATCTTCCAGTGCTTCATCGTCCCCATGTTCATGGGTGGAGCAACTGACATTGGAGTGGTCAATGAGAGCTTAGAGAAG
CTGAAGAAAGCCCTTGAAGTCTACGAGGCGCAGCTGTCCAAATCCAAGTACTTAGCCGGGGATTTCATTAGCTTGGCAGA
TATCAGCCATTTCCCGACGGTTTATTACCTGCTGGCATCTGCCCATGCTTCTGTGCTCGAAGCCTATCCGCGTGTGAAGG
CTTGGATCGATGATGTGATGCAGAGGCCGAGCGTGAAGAAGGTGACAGAGGCTCTGAAGATGCCGTCTGCTTAATAAAAA
CTGAAGCTATACAGTTTGTAGTAATGAACTCAATTTCAGCGTTGCGTGACATGATGCAGCAGTTTGCATCATCTGTATGA
CTATATTCGTCTAGAAAAAACGTGTTGTTTGTTCATTAATAAGCAGTGTAGCGCCTATATTTATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis