Browse Element(s) Details


OsAffx.29396.4.S1_x_at

Description tigr:9629.m02621
TID=OsAffx.29396.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2743011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27370OsAffx.23415.1.S1_at11/111+15610938..15612683hypothetical protein
LOC_Os01g27380OsAffx.23416.1.S1_s_at11/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27380OsAffx.23416.1.S1_at9/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27390Os.36663.1.S1_at11/111+15618535..15621275glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27400OsAffx.11226.1.S1_at11/111+15623829..15625998hypothetical protein
LOC_Os01g27410NANA1+15626643..15626939hypothetical protein
LOC_Os01g27420OsAffx.19542.3.S1_x_at7/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27420OsAffx.21754.1.S1_x_at1/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27430OsAffx.29396.4.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.2.S1_x_at11/111+15635934..15639882hypothetical protein
LOC_Os01g27430Os.31929.3.S1_x_at2/111+15635934..15639882hypothetical protein
LOC_Os01g27430OsAffx.29396.5.S1_x_at1/111+15635934..15639882hypothetical protein
LOC_Os01g27440Os.17546.2.S1_x_at1/111+15643761..15650064retrotransposon protein, putative, unclassified
LOC_Os01g27450OsAffx.20451.1.S1_at1/111+15659363..15660813hypothetical protein
LOC_Os01g27459NANA1+15661976..15662155NA
LOC_Os01g27470OsAffx.21134.1.S1_at11/111+15663396..15664454Ubiquitin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29396.4.S1_x_at--688--8631Chr01:15639018..15639042 (25 bp)
TGGGCTTTCTGCAACCGTTCGGCTA
LOC_Os01g27430
OsAffx.29396.4.S1_x_at--1109--10291Chr01:15639023..15639047 (25 bp)
TTTCTGCAACCGTTCGGCTACGAGC
LOC_Os01g27430
OsAffx.29396.4.S1_x_at--770--7111Chr01:15639089..15639113 (25 bp)
GTCAGTGCACAGGACATTTCGCCCG
LOC_Os01g27430
OsAffx.29396.4.S1_x_at--153--9571Chr01:15639175..15639199 (25 bp)
TCTTCTTGAGCAACTAGCGAAGGCT
LOC_Os01g27430
OsAffx.29396.4.S1_x_at--562--7711Chr01:15639588..15639612 (25 bp)
GGGTGTTCACCGAAAATTGTGCGTT
LOC_Os01g27430
OsAffx.29396.4.S1_x_at--87--7251Chr01:15639686..15639710 (25 bp)
GTCCGTTTCGGCTTGTTTATCATGA
LOC_Os01g27430
OsAffx.29396.4.S1_x_at--773--10611Chr01:15639692..15639716 (25 bp)
TTCGGCTTGTTTATCATGAGATGAT
LOC_Os01g27430
OsAffx.29396.4.S1_x_at--733--3271Chr01:15639723..15639747 (25 bp)
CAGCAACAGTTACAAGGTTTTGAAG
LOC_Os01g27430
OsAffx.29396.4.S1_x_at--188--2031Chr01:15639791..15639815 (25 bp)
ACTACGACCATGTTCATACAGAAGG
LOC_Os01g27430
OsAffx.29396.4.S1_x_at--207--1732Chr01:15639797..15639821 (25 bp)
ACCATGTTCATACAGAAGGTCTGGA
LOC_Os01g27430
OsAffx.29396.4.S1_x_at--242--7811Chr01:15639814..15639838 (25 bp)
GGTCTGGAGAACATGGTTCGCTTTT
LOC_Os01g27430
Target Sequence 
TGGGCTTTCTGCAACCGTTCGGCTACGAGCACGTCGCCGAGTTCCCTAACTATGCGAAGGGGGACTGGGAGGTCAGTGCA
CAGGACATTTCGCCCGCGCTTCACGCCTGGCGAAAACAGTTATGGCAGAAGGACGGCCGATCCACCGCCAAGGCGCGTCT
TCTTGAGCAACTAGCGAAGGCTGAGGCGGCGGACCAGGGCGAAGGGGAGGATGCAGCGGTCGGAGGGGGTGGAGGCGATG
CCCAAGATCACCCAGAGGGTGTTCACCGAAAATTGTGCGTTTGGCCCCCCTTTGGGAATTGGCGAAGCAAGAACAAGAAG
TTCGTGGCAGTGAAGGGTTTGCCGAAGGTGCGATGTCCGTTTCGGCTTGTTTATCATGAGATGATAATAAACAGCAACAG
TTACAAGGTTTTGAAGGTTGTCGGCTGGATGCGGGCGCACCCCGGGCGAACCCTGGAAGACTACGACCATGTTCATACAG
AAGGTCTGGAGAACATGGTTCGCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29396.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis