Browse Element(s) Details


OsAffx.11224.1.S1_at

Description tigr:9629.m02608
TID=OsAffx.11224.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2730011/11glutathione S-transferase GSTF1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27260OsAffx.23414.1.S1_at11/111+15543923..15544818glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27270OsAffx.10222.1.S1_x_at2/111+15546761..15548536Zinc knuckle family protein
LOC_Os01g27280NANA1+15549971..15557101retrotransposon protein, putative, unclassified
LOC_Os01g27289NANA1+15557963..15558143NA
LOC_Os01g27300OsAffx.11224.1.S1_at11/111+15561311..15561559glutathione S-transferase GSTF1, putative
LOC_Os01g27320Os.45173.1.S1_x_at2/111+15572320..15578753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27320Os.47371.1.S1_at1/111+15572320..15578753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27320Os.9523.1.S1_at1/111+15572320..15578753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27330OsAffx.11225.1.S1_at11/111+15580407..15581775hypothetical protein
LOC_Os01g27340Os.40662.1.S1_at11/111+15585714..15587153glutathione S-transferase GSTF1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0009414biological_processresponse to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0005792cellular_componentmicrosome
GO:0005886cellular_componentplasma membrane
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11224.1.S1_at--904--3371Chr01:15561341..15561365 (25 bp)
CACCAATTTAATCCAGCACTATCGC
LOC_Os01g27300
OsAffx.11224.1.S1_at--1092--171Chr01:15561346..15561370 (25 bp)
ATTTAATCCAGCACTATCGCCAATC
LOC_Os01g27300
OsAffx.11224.1.S1_at--1035--1491Chr01:15561355..15561379 (25 bp)
AGCACTATCGCCAATCATGTTCCAG
LOC_Os01g27300
OsAffx.11224.1.S1_at--182--9331Chr01:15561362..15561386 (25 bp)
TCGCCAATCATGTTCCAGTGCATCA
LOC_Os01g27300
OsAffx.11224.1.S1_at--827--851Chr01:15561402..15561426 (25 bp)
ATGGCATCCCAACCAACCAGAAGAT
LOC_Os01g27300
OsAffx.11224.1.S1_at--441--1711Chr01:15561417..15561441 (25 bp)
ACCAGAAGATCGTGGATGAGACTGT
LOC_Os01g27300
OsAffx.11224.1.S1_at--1068--1031Chr01:15561465..15561489 (25 bp)
AGGTGTACGAGGCACATCTATCGGA
LOC_Os01g27300
OsAffx.11224.1.S1_at--954--6191Chr01:15561473..15561497 (25 bp)
GAGGCACATCTATCGGAGAACACAT
LOC_Os01g27300
OsAffx.11224.1.S1_at--1029--10031Chr01:15561483..15561507 (25 bp)
TATCGGAGAACACATACCTCGCCGG
LOC_Os01g27300
OsAffx.11224.1.S1_at--255--1751Chr01:15561498..15561522 (25 bp)
ACCTCGCCGGAGAATTCGTTAGCTT
LOC_Os01g27300
OsAffx.11224.1.S1_at--728--3951Chr01:15561505..15561529 (25 bp)
CGGAGAATTCGTTAGCTTTGCCAAT
LOC_Os01g27300
Target Sequence 
CACCAATTTAATCCAGCACTATCGCCAATCATGTTCCAGTGCATCATCAACCCGGCCTTGCATGGCATCCCAACCAACCA
GAAGATCGTGGATGAGACTGTGGAGAAGTTGAAGAAGGTGCTGGAGGTGTACGAGGCACATCTATCGGAGAACACATACC
TCGCCGGAGAATTCGTTAGCTTTGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis