Browse Element(s) Details


OsAffx.23414.1.S1_at

Description tigr:9629.m02604
TID=OsAffx.23414.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glutathione S-transferase, C-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2726011/11glutathione S-transferase GSTF1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27240Os.50513.1.S1_at11/111+15519726..15522561oxidoreductase, FAD/FMN-binding family protein, expressed
LOC_Os01g27240Os.27098.2.A1_s_at1/111+15519726..15522561oxidoreductase, FAD/FMN-binding family protein, expressed
LOC_Os01g27250Os.35344.3.S1_x_at11/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.2.S1_s_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.5.S1_x_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.1.S1_s_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.5.S1_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250Os.35344.18.S1_x_at9/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.3.S1_x_at9/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.2.S1_at8/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.31552.2.S1_at1/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27260OsAffx.23414.1.S1_at11/111+15543923..15544818glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27270OsAffx.10222.1.S1_x_at2/111+15546761..15548536Zinc knuckle family protein
LOC_Os01g27280NANA1+15549971..15557101retrotransposon protein, putative, unclassified
LOC_Os01g27289NANA1+15557963..15558143NA
LOC_Os01g27300OsAffx.11224.1.S1_at11/111+15561311..15561559glutathione S-transferase GSTF1, putative

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009407biological_processtoxin catabolism
GO:0009414biological_processresponse to water deprivation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23414.1.S1_at--217--5711Chr01:15544713..15544737 (25 bp)
GACTACGAGCTAGTGACCGTCGACT
LOC_Os01g27260
OsAffx.23414.1.S1_at--507--5051Chr01:15544675..15544699 (25 bp)
GCAGAACAGCCCAGAGCACGTCGAG
LOC_Os01g27260
OsAffx.23414.1.S1_at--237--3351Chr01:15544559..15544683 (25 bp)
CACGTCGAGCGAAACCCATTTGGGA
LOC_Os01g27260
OsAffx.23414.1.S1_at--484--211Chr01:15544542..15544566 (25 bp)
ATTTGGGAAGATCCCTGCTCTGCAG
LOC_Os01g27260
OsAffx.23414.1.S1_at--639--9391Chr01:15544368..15544531 (25 bp)
TCGTCTTGTTCGAGTCGCGCGCAAT
LOC_Os01g27260
OsAffx.23414.1.S1_at--279--4571Chr01:15544352..15544376 (25 bp)
GCGCGCAATCGCAAAGTACATTCTT
LOC_Os01g27260
OsAffx.23414.1.S1_at--487--1151Chr01:15544317..15544341 (25 bp)
AGTCGAGCAAAGTCGATCTCCTCCG
LOC_Os01g27260
OsAffx.23414.1.S1_at--442--6131Chr01:15544249..15544273 (25 bp)
GAGGTCGAGGCGCACCAGTACTACC
LOC_Os01g27260
OsAffx.23414.1.S1_at--286--511Chr01:15544210..15544234 (25 bp)
ATCGTGTTCGAGTGCATCATCTTCC
LOC_Os01g27260
OsAffx.23414.1.S1_at--107--1731Chr01:15544161..15544185 (25 bp)
ACCAGCAGGTGGTTCACGAGAGCCT
LOC_Os01g27260
OsAffx.23414.1.S1_at--1121--3851Chr01:15543997..15544021 (25 bp)
CTGTTTGATGCGTACCCTCATGTGA
LOC_Os01g27260
Target Sequence 
GACTACGAGCTAGTGACCGTCGACTTCCTCGCCGGCGAGCAGAACAGCCCAGAGCACGTCGAGCGAAACCCATTTGGGAA
GATCCCTGCTCTGCAGGACGGGGACCTCGTCTTGTTCGAGTCGCGCGCAATCGCAAAGTACATTCTTCGCAAGTACAAGT
CGAGCAAAGTCGATCTCCTCCGGGAGAGCGACATCAGGGAGGCCGCGTTGGTGGACGTATGGACGGAGGTCGAGGCGCAC
CAGTACTACCCTGCACTGTCGCCCATCGTGTTCGAGTGCATCATCTTCCCCATCATGCGCGGGGTCCCGACCAACCAGCA
GGTGGTTCACGAGAGCCTGGAGAAGCTGAAGAAGGTGCTCGAGACGTACGAGGCGCGGCTGTCGGGGAGCAGGTACCTCG
CCGGGGATTTCCTCAGCTTCGCGGACCTGAACCACTTCCCCTTCACGTTCTACTTCATGGCGACCCCGTGCGCGTCGCTG
TTTGATGCGTACCCTCATGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis