Browse Element(s) Details


OsAffx.11310.1.S1_at

Description tigr:9629.m03197
TID=OsAffx.11310.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3412011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34080Os.9508.1.S1_at11/111+19090117..19101323Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g34090OsAffx.23504.1.S1_at6/111+19104699..19105034hypothetical protein
LOC_Os01g34100Os.51860.1.S1_at11/111+19107447..19108239expressed protein
LOC_Os01g34110NANA1+19109117..19109413hypothetical protein
LOC_Os01g34120OsAffx.11310.1.S1_at11/111+19118577..19118882hypothetical protein
LOC_Os01g34130NANA1+19122256..19122588retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34140Os.14491.2.S1_x_at3/111+19132438..19140507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34140Os.47463.1.S1_x_at2/111+19132438..19140507transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11310.1.S1_at--1012--2731Chr01:19118625..19118649 (25 bp)
AAGAAGCATACCCAGATTGGCCAAG
LOC_Os01g34120
OsAffx.11310.1.S1_at--954--3131Chr01:19118651..19118675 (25 bp)
AATTGAGTCTCGGATATGGCCTCCA
LOC_Os01g34120
OsAffx.11310.1.S1_at--561--10091Chr01:19118665..19118689 (25 bp)
TATGGCCTCCAAAGTGTGAAGGTTG
LOC_Os01g34120
OsAffx.11310.1.S1_at--614--5311Chr01:19118682..19118706 (25 bp)
GAAGGTTGGAGCTTCACCGAAGTAA
LOC_Os01g34120
OsAffx.11310.1.S1_at--1084--8071Chr01:19118689..19118713 (25 bp)
GGAGCTTCACCGAAGTAACTTGTCA
LOC_Os01g34120
OsAffx.11310.1.S1_at--688--7051Chr01:19118703..19118727 (25 bp)
GTAACTTGTCAAGCTCAGCTTCTAG
LOC_Os01g34120
OsAffx.11310.1.S1_at--1001--1571Chr01:19118714..19118738 (25 bp)
AGCTCAGCTTCTAGACAAAAATGCA
LOC_Os01g34120
OsAffx.11310.1.S1_at--922--3271Chr01:19118729..19118753 (25 bp)
CAAAAATGCACAACCGGTATCCCAA
LOC_Os01g34120
OsAffx.11310.1.S1_at--838--4251Chr01:19118742..19118766 (25 bp)
CCGGTATCCCAAATCTGCTTAACAA
LOC_Os01g34120
OsAffx.11310.1.S1_at--303--691Chr01:19118814..19118838 (25 bp)
ATGACCACGGCCCTTGAGGATATCA
LOC_Os01g34120
OsAffx.11310.1.S1_at--519--8411Chr01:19118822..19118846 (25 bp)
GGCCCTTGAGGATATCATGCTGAAA
LOC_Os01g34120
Target Sequence 
AAGAAGCATACCCAGATTGGCCAAGAAATTGAGTCTCGGATATGGCCTCCAAAGTGTGAAGGTTGGAGCTTCACCGAAGT
AACTTGTCAAGCTCAGCTTCTAGACAAAAATGCACAACCGGTATCCCAAATCTGCTTAACAACAGTTGGACAAGTGGGTA
ATGTTGGGGGTGAACCGGAAGTGATGAAGATGACCACGGCCCTTGAGGATATCATGCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis