Browse Element(s) Details


Os.51860.1.S1_at

Description gb:AK064104.1
DB_XREF= gi:32974122
TID=Os.51860.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D03, full insert sequence.
FL= gb:AK064104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3410011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34060Os.15338.1.S1_a_at11/111+19082123..19083747myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g34080Os.9508.1.S1_at11/111+19090117..19101323Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g34090OsAffx.23504.1.S1_at6/111+19104699..19105034hypothetical protein
LOC_Os01g34100Os.51860.1.S1_at11/111+19107447..19108239expressed protein
LOC_Os01g34110NANA1+19109117..19109413hypothetical protein
LOC_Os01g34120OsAffx.11310.1.S1_at11/111+19118577..19118882hypothetical protein
LOC_Os01g34130NANA1+19122256..19122588retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34140Os.14491.2.S1_x_at3/111+19132438..19140507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34140Os.47463.1.S1_x_at2/111+19132438..19140507transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51860.1.S1_at--998--10571Chr01:19107816..19107840 (25 bp)
TTCTCTCCTTGTCGTGTGGTGGCCG
LOC_Os01g34100
Os.51860.1.S1_at--389--10671Chr01:19107849..19107873 (25 bp)
TTCCTCGCCAGATTCGGCGGGCCGA
LOC_Os01g34100
Os.51860.1.S1_at--340--4071Chr01:19107885..19107909 (25 bp)
CGAGGATCAGCGTGCGGCAGCCTCC
LOC_Os01g34100
Os.51860.1.S1_at--857--3811Chr01:19107925..19107949 (25 bp)
CTCCTATCACCATCTCGTGTTAATA
LOC_Os01g34100
Os.51860.1.S1_at--1083--6511Chr01:19107981..19108005 (25 bp)
GATTTGGACTCGGATTTTATTTTTG
LOC_Os01g34100
Os.51860.1.S1_at--872--8131Chr01:19108109..19108133 (25 bp)
GGACAGATGAAAAATCACCGTACGT
LOC_Os01g34100
Os.51860.1.S1_at--506--371Chr01:19108122..19108146 (25 bp)
ATCACCGTACGTACGAGGTGACGAA
LOC_Os01g34100
Os.51860.1.S1_at--1059--5771Chr01:19108141..19108165 (25 bp)
GACGAAAGGAAAGTCATGGATGTTT
LOC_Os01g34100
Os.51860.1.S1_at--96--6271Chr01:19108177..19108201 (25 bp)
GATGTAGTTATATGTCCGATCCAAA
LOC_Os01g34100
Os.51860.1.S1_at--599--7251Chr01:19108190..19108214 (25 bp)
GTCCGATCCAAAATGTGATTCCCTT
LOC_Os01g34100
Os.51860.1.S1_at--35--7411Chr01:19108204..19108228 (25 bp)
GTGATTCCCTTGATAATAAAGTCTT
LOC_Os01g34100
Target Sequence 
TTCTCTCCTTGTCGTGTGGTGGCCGCCACCCTGTTCCTCGCCAGATTCGGCGGGCCGATGGCGAGGTGGCGAGGATCAGC
GTGCGGCAGCCTCCGGTTCGCCCCGCCCTCTCCTATCACCATCTCGTGTTAATATTTTGGATGTTTTTTTGATGATTCCG
ATTTAGATTTGGACTCGGATTTTATTTTTGATTTGGATTGTGATGATTTGAGATTTGGAGAGAAGGTGTTCTCAATGTGG
GATTCTATTTGTGTGATGATGGAATTCTGATTGAGATTTTTTTTTGGGGGGGGGGACAGATGAAAAATCACCGTACGTAC
GAGGTGACGAAAGGAAAGTCATGGATGTTTTAATTAGTTAAGATGTAGTTATATGTCCGATCCAAAATGTGATTCCCTTG
ATAATAAAGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis