Browse Element(s) Details


Os.15338.1.S1_a_at

Description gb:AY151042.1
DB_XREF= gi:24850302
TID=Os.15338.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15338 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transcription factor MYBS1 mRNA, complete cds.
PROD=transcription factor MYBS1
FL= gb:AY151042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3406011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34030OsAffx.22711.3.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.20380.1.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.22711.1.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.20380.2.S1_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.1.S1_at11/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.3.S1_x_at4/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_x_at3/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.20729.1.S1_x_at2/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_at1/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.5.S1_x_at1/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34050Os.57403.1.S1_x_at11/111+19076131..19077327expressed protein
LOC_Os01g34050Os.57403.1.S1_at11/111+19076131..19077327expressed protein
LOC_Os01g34050OsAffx.21170.1.S1_at1/111+19076131..19077327expressed protein
LOC_Os01g34060Os.15338.1.S1_a_at11/111+19082123..19083747myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g34080Os.9508.1.S1_at11/111+19090117..19101323Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g34090OsAffx.23504.1.S1_at6/111+19104699..19105034hypothetical protein
LOC_Os01g34100Os.51860.1.S1_at11/111+19107447..19108239expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15338.1.S1_a_at--1017--3211Chr01:19083275..19083299 (25 bp)
CAAGATGCACCAATGACGCGCCATG
LOC_Os01g34060
Os.15338.1.S1_a_at--990--831Chr01:19083297..19083321 (25 bp)
ATGGACGGACATGAGCAGCATTTCT
LOC_Os01g34060
Os.15338.1.S1_a_at--242--5671Chr01:19083304..19083328 (25 bp)
GACATGAGCAGCATTTCTTCCTCCT
LOC_Os01g34060
Os.15338.1.S1_a_at--437--9611Chr01:19083375..19083399 (25 bp)
TCATCGTCCCTGATCATCTTGTTCT
LOC_Os01g34060
Os.15338.1.S1_a_at--219--3631Chr01:19083392..19083416 (25 bp)
CTTGTTCTTCTCACAATCTCACTAA
LOC_Os01g34060
Os.15338.1.S1_a_at--289--2831Chr01:19083479..19083503 (25 bp)
AAGTATTTTGCTGACTGTTTGCAAG
LOC_Os01g34060
Os.15338.1.S1_a_at--277--7031Chr01:19083514..19083538 (25 bp)
GTACACCCGGTGAAAGCTTAGCTCC
LOC_Os01g34060
Os.15338.1.S1_a_at--274--8971Chr01:19083524..19083548 (25 bp)
TGAAAGCTTAGCTCCAAATGTGGAT
LOC_Os01g34060
Os.15338.1.S1_a_at--551--7511Chr01:19083543..19083567 (25 bp)
GTGGATGTAATTAGCAGCGGCCTTC
LOC_Os01g34060
Os.15338.1.S1_a_at--295--7551Chr01:19083576..19083600 (25 bp)
GTGGCGCCGATCGATGATCTTGCAG
LOC_Os01g34060
Os.15338.1.S1_a_at--95--7931Chr01:19083614..19083638 (25 bp)
GGATTGATTTCCATTTTGCTGATGT
LOC_Os01g34060
Target Sequence 
CAAGATGCACCAATGACGCGCCATGGACGGACATGAGCAGCATTTCTTCCTCCTCCTTTCTTGATGTCAATCTTGATTTG
TTCTTTGTGTAGTCGCCGGCTCATCGTCCCTGATCATCTTGTTCTTCTCACAATCTCACTAATGTAAACATACATAGATC
AGATGCCAAGAGTGCAGGGATTGGGGATTAAAGGCGAATAAGTAAAGTATTTTGCTGACTGTTTGCAAGTGATCATCACG
TACACCCGGTGAAAGCTTAGCTCCAAATGTGGATGTAATTAGCAGCGGCCTTCCGTACGTGGTGGCGCCGATCGATGATC
TTGCAGGGGTTGCAATTAGGGATTGATTTCCATTTTGCTGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15338.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis