Browse Element(s) Details


Os.9508.1.S1_at

Description gb:AK105413.1
DB_XREF= gi:32990622
TID=Os.9508.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9508 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-H08, full insert sequence.
FL= gb:AK105413.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3408011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34040OsAffx.21171.1.S1_at11/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.3.S1_x_at4/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_x_at3/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.20729.1.S1_x_at2/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_at1/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.5.S1_x_at1/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34050Os.57403.1.S1_x_at11/111+19076131..19077327expressed protein
LOC_Os01g34050Os.57403.1.S1_at11/111+19076131..19077327expressed protein
LOC_Os01g34050OsAffx.21170.1.S1_at1/111+19076131..19077327expressed protein
LOC_Os01g34060Os.15338.1.S1_a_at11/111+19082123..19083747myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g34080Os.9508.1.S1_at11/111+19090117..19101323Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g34090OsAffx.23504.1.S1_at6/111+19104699..19105034hypothetical protein
LOC_Os01g34100Os.51860.1.S1_at11/111+19107447..19108239expressed protein
LOC_Os01g34110NANA1+19109117..19109413hypothetical protein
LOC_Os01g34120OsAffx.11310.1.S1_at11/111+19118577..19118882hypothetical protein
LOC_Os01g34130NANA1+19122256..19122588retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9508.1.S1_at--274--9171Chr01:19100746..19100770 (25 bp)
TGCGCCAGACATAGTAGCAGTTCTT
LOC_Os01g34080
Os.9508.1.S1_at--12--2993Chr12:20639471..20639491 (21 bp)
AATGTGCTGACGCTGCTTCTGTAAA
NONE
Os.9508.1.S1_at--372--9471Chr01:19100863..19100887 (25 bp)
TCTGGTGTTACTTCATCATCCTTGT
LOC_Os01g34080
Os.9508.1.S1_at--818--571Chr01:19100880..19100904 (25 bp)
ATCCTTGTCCTACTGCCACAGTTAA
LOC_Os01g34080
Os.9508.1.S1_at--326--9171Chr01:19100908..19100932 (25 bp)
TGCCCTTCTCCCAGTTAGATTATTG
LOC_Os01g34080
Os.9508.1.S1_at--847--7631Chr01:19101095..19101119 (25 bp)
GGGACGCGTCGTATATGATGCTATT
LOC_Os01g34080
Os.9508.1.S1_at--684--10231Chr01:19101116..19101140 (25 bp)
TATTGGGTCATCACGTGCAGCTCAC
LOC_Os01g34080
Os.9508.1.S1_at--28--10671Chr01:19101160..19101184 (25 bp)
TTCCTTCACCTATGTTGGCATTCAT
LOC_Os01g34080
Os.9508.1.S1_at--990--9691Chr01:19101246..19101270 (25 bp)
TCAACGTTTCCTACTGTGTTCAGAC
LOC_Os01g34080
Os.9508.1.S1_at--246--6751Chr01:19101263..19101287 (25 bp)
GTTCAGACCTACAGCTCGATCAGTT
LOC_Os01g34080
Os.9508.1.S1_at--1106--3391Chr01:19101295..19101319 (25 bp)
CAGCATATGCATTTACGTTCGGGAC
LOC_Os01g34080
Target Sequence 
TGCGCCAGACATAGTAGCAGTTCTTGATAGTACCAAGACACTGCAGAAAATTCACATTGTTGCGGAAATCCACAATGTGC
TGACGCTGCTTCTGTAAATGATTCTAAAGAGTAGAATTCTGGTGTTACTTCATCATCCTTGTCCTACTGCCACAGTTAAT
TTTGCCCTTCTCCCAGTTAGATTATTGCATTGGGGAGAGTATTTCCCCAANATGTAACTGAAGTATTATGNANCTTAGCA
AATGTAGTACTTGAAGTAAAAAAAAAAGCCTAACAATCAGCTTGAAGCAATGGGTGACTGTAGCTGCGAGTCTGGTNCGT
CTGTCCCNATGNCGTTGAAGTTGAACCCAGAGGGACGCGTCGTATATGATGCTATTGGGTCATCACGTGCAGCTCACGTA
ATTTCTGGAATTGTTTTTCCTTCACCTATGTTGGCATTCATGATGGATGCTTGGTAACTGGGAGGAAATATGTAGTGGTA
ACTGTTGGAGTAAGTATTGCATTCAACGTTTCCTACTGTGTTCAGACCTACAGCTCGATCAGTTCCTTCATCAGCATATG
CATTTACGTTCGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis