Browse Element(s) Details


OsAffx.21170.1.S1_at

Description gb:NM_193686.1
DB_XREF= gi:34914455
GEN=OJ1005_B10.29
TID=OsAffx.21170.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1005_B10.29 (OJ1005_B10.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g340501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34020NANA1+19054772..19054993transposon protein, putative, unclassified
LOC_Os01g34030OsAffx.22711.3.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.20380.1.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.22711.1.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.20380.2.S1_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.1.S1_at11/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.3.S1_x_at4/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_x_at3/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.20729.1.S1_x_at2/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_at1/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.5.S1_x_at1/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34050Os.57403.1.S1_x_at11/111+19076131..19077327expressed protein
LOC_Os01g34050Os.57403.1.S1_at11/111+19076131..19077327expressed protein
LOC_Os01g34050OsAffx.21170.1.S1_at1/111+19076131..19077327expressed protein
LOC_Os01g34060Os.15338.1.S1_a_at11/111+19082123..19083747myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g34080Os.9508.1.S1_at11/111+19090117..19101323Armadillo/beta-catenin-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21170.1.S1_at--846--1351Chr01:19077187..19077291 (25 bp)
AGAGAAGGGTAGTGTCTCCATCCAA
LOC_Os01g34050
OsAffx.21170.1.S1_at--701--3873Chr01:19077320..19077623 (25 bp)
CTGTAGGTGTGTTTGATTCTTATTC
NONE
OsAffx.21170.1.S1_at--768--6514Chr01:19077712..19077736 (25 bp)
GATATACAGGTGCTGCTGTTTTGTC
NONE
OsAffx.21170.1.S1_at--1032--9091Chr01:19077725..19077749 (25 bp)
TGCTGTTTTGTCTGGTCCAGTCAGA
NONE
OsAffx.21170.1.S1_at--673--9211Chr01:19077740..19077764 (25 bp)
TCCAGTCAGACCGATCAGGTGTTGC
NONE
OsAffx.21170.1.S1_at--394--1391Chr01:19077770..19078148 (25 bp)
AGACCGACGCTATGCGAGCGAGAGA
NONE
OsAffx.21170.1.S1_at--512--6856Chr04:12940346..12940370 (25 bp)
GTTTGCTCGGGTTCAGCGGTCTAAC
NONE
OsAffx.21170.1.S1_at--487--3731Chr01:19078504..19078528 (25 bp)
CTAACTGGCGAGACATCGGCGGTCA
NONE
OsAffx.21170.1.S1_at--906--1312Chr01:19078621..19078645 (25 bp)
AGAGGCGATTCCAGGGCAGTCAGAC
NONE
OsAffx.21170.1.S1_at--324--71Chr01:19078628..19078652 (25 bp)
ATTCCAGGGCAGTCAGACCGGGCTA
NONE
OsAffx.21170.1.S1_at--394--9651Chr01:19078640..19078664 (25 bp)
TCAGACCGGGCTACCGACGGCACAG
NONE
Target Sequence 
AGAGAAGGGTAGTGTCTCCATCCAACTAAGCCACACATATATTGGTGCTTGCACTGTAGGTGTGTTTGATTCTTATTCTG
TGATGAACAATTGGCATATGAGATTATTGGTTTTGATATTTGGAGATTATTGGCGAGTGGTTTTGGAGATGATTGGATTT
TCAGGTGATATACAGGTGCTGCTGTTTTGTCTGGTCCAGTCAGACCGATCAGGTGTTGCCGGTCAGACCGACGCTATGCG
AGCGAGAGAAGTAATAAAGTTGTCATCTACATCAAGAGTTCTTCGATTTGTGTTTGCTCGGGTTCAGCGGTCTAACTGGC
GAGACATCGGCGGTCAGACCGGCGGCACTGCGGCGGTCAGATCGGCGGGTCAGCGGTGGTCAGACCGGCGGGTCAGCGGT
GGTCAGACCGGCGACAGCGACAGGAGGCAGAGGCGATTCCAGGGCAGTCAGACCGGGCTACCGACGGCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis