Browse Element(s) Details


OsAffx.11366.1.S1_at

Description tigr:9629.m03586
TID=OsAffx.11366.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peptidase M16 inactive domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3783211/11GM14633p, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37790Os.20002.1.S1_at11/111+21465717..21469941expressed protein
LOC_Os01g37800Os.6802.1.S1_at11/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37800Os.57451.1.S1_x_at3/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37810OsAffx.23546.1.S1_at11/111+21477308..21477697expressed protein
LOC_Os01g37820Os.38090.2.S1_x_at11/111+21478387..21482486expressed protein
LOC_Os01g37820Os.38090.1.S1_at11/111+21478387..21482486expressed protein
LOC_Os01g37825Os.6069.1.S1_at11/111+21488749..21494266peptidase M16 family protein, putative, expressed
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37837Os.5952.4.S1_x_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37837Os.5952.2.S1_s_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37842Os.54221.1.A1_at11/111+21508294..21510864expressed protein
LOC_Os01g37842OsAffx.11367.1.S1_x_at11/111+21508294..21510864expressed protein
LOC_Os01g37850Os.18128.1.S1_a_at11/111+21511789..21514271expressed protein
LOC_Os01g37860NANA1+21515576..21521235retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37870Os.19155.1.S1_at11/111+21522279..21528594pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11366.1.S1_at--433--10791Chr01:21498801..21498825 (25 bp)
TTGATACTTGTAGCTCCTTTCTGAT
LOC_Os01g37832
OsAffx.11366.1.S1_at--108--6971Chr01:21498810..21498834 (25 bp)
GTAGCTCCTTTCTGATTCTAAATTA
LOC_Os01g37832
OsAffx.11366.1.S1_at--230--3531Chr01:21498933..21498957 (25 bp)
CATCCAATTCCTGAGTGCTAACACT
LOC_Os01g37832
OsAffx.11366.1.S1_at--1127--7312Chr06:17944949..17944972 (23 bp)
GTGCTAACACTCTGTTTCCATGCAA
NONE
OsAffx.11366.1.S1_at--439--6851Chr01:21498960..21498984 (25 bp)
GTTTCCATGCAAATGTCTTGTTGAA
LOC_Os01g37832
OsAffx.11366.1.S1_at--953--7131Chr01:21498974..21498998 (25 bp)
GTCTTGTTGAACTCATTGTCATTAT
LOC_Os01g37832
OsAffx.11366.1.S1_at--773--7131Chr01:21498991..21499015 (25 bp)
GTCATTATTCTTTAGCATCTCCCGC
LOC_Os01g37832
OsAffx.11366.1.S1_at--294--471Chr01:21499007..21499031 (25 bp)
ATCTCCCGCTTCCAATATCAGGCAG
LOC_Os01g37832
OsAffx.11366.1.S1_at--359--3631Chr01:21499015..21499039 (25 bp)
CTTCCAATATCAGGCAGCTCTTATA
LOC_Os01g37832
OsAffx.11366.1.S1_at--134--1591Chr01:21499030..21499054 (25 bp)
AGCTCTTATATCTCCCTCTGTGATG
LOC_Os01g37832
OsAffx.11366.1.S1_at--854--451Chr01:21499039..21499063 (25 bp)
ATCTCCCTCTGTGATGCAGAACTAA
LOC_Os01g37832
Target Sequence 
TTGATACTTGTAGCTCCTTTCTGATTCTAAATTATAACCAGGAGTTTTTGTCTTCAAAAACTTTTTACGAAATGAATAAA
CTTTTTACGAAATGAATAGGGAGTTACTTTTATTTAGTACTTGAAGTTAATTCATCCAATTCCTGAGTGCTAACACTCTG
TTTCCATGCAAATGTCTTGTTGAACTCATTGTCATTATTCTTTAGCATCTCCCGCTTCCAATATCAGGCAGCTCTTATAT
CTCCCTCTGTGATGCAGAACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis