Browse Element(s) Details


OsAffx.11382.1.S1_at

Description tigr:9629.m03702
TID=OsAffx.11382.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3896011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38930OsAffx.14826.2.S1_at1/111+22196795..22198314hypothetical protein
LOC_Os01g38940OsAffx.2189.1.S1_at11/111+22202972..22203438hypothetical protein
LOC_Os01g38950Os.12864.1.S1_a_at11/111+22205837..22210876Casein kinase I, delta isoform, putative, expressed
LOC_Os01g38950Os.12864.4.S1_x_at11/111+22205837..22210876Casein kinase I, delta isoform, putative, expressed
LOC_Os01g38960OsAffx.11382.1.S1_at11/111+22213746..22214687expressed protein
LOC_Os01g38970Os.48825.1.S1_at10/111+22219635..22224767Carbamoyl-phosphate synthase large chain, putative, expressed
LOC_Os01g38980Os.5356.1.S1_at11/111+22226897..22229950calmodulin-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11382.1.S1_at--287--531Chr01:22214210..22214234 (25 bp)
ATCGACGTCGGGACGCACGGCCCGA
LOC_Os01g38960
OsAffx.11382.1.S1_at--444--5871Chr01:22214142..22214166 (25 bp)
GAGCCTGTCGGCGAAGCACATGCGC
LOC_Os01g38960
OsAffx.11382.1.S1_at--568--3931Chr01:22214134..22214158 (25 bp)
CGGCGAAGCACATGCGCCTCGCGGA
LOC_Os01g38960
OsAffx.11382.1.S1_at--1051--1611Chr01:22214110..22214134 (25 bp)
AGCGGCTCGGGTCGCGGATATGGTC
LOC_Os01g38960
OsAffx.11382.1.S1_at--444--8111Chr01:22213990..22214014 (25 bp)
GGACGAAGACGATCATCCTCGGCGA
LOC_Os01g38960
OsAffx.11382.1.S1_at--110--2771Chr01:22213985..22214009 (25 bp)
AAGACGATCATCCTCGGCGAGCGTT
LOC_Os01g38960
OsAffx.11382.1.S1_at--532--7511Chr01:22213908..22213932 (25 bp)
GTGGAGGAGCTACCGGCCGAGGCAG
LOC_Os01g38960
OsAffx.11382.1.S1_at--1150--4491Chr01:22213872..22213896 (25 bp)
GCCGATGACGCGGAGCAACTCGTTC
LOC_Os01g38960
OsAffx.11382.1.S1_at--997--8931Chr01:22213867..22213891 (25 bp)
TGACGCGGAGCAACTCGTTCGCCGG
LOC_Os01g38960
OsAffx.11382.1.S1_at--723--8631Chr01:22213840..22213864 (25 bp)
TGGGTAGCCGTAGCCTGCAGCTGCA
LOC_Os01g38960
OsAffx.11382.1.S1_at--663--5751Chr01:22213778..22213802 (25 bp)
GACGTGCCCTTCCATCTAGGTCGGA
LOC_Os01g38960
Target Sequence 
ATCGACGTCGGGACGCACGGCCCGATCGCGCCGGCGTTCCCGGCGCCCGACCCGCTCCCGCCGCGGCGGAGCCTGTCGGC
GAAGCACATGCGCCTCGCGGAGCGGCTCGGGTCGCGGATATGGTCGACGCGGTGGGGGCGGGACGACCACGATGACGATG
ACGACGAGGACGCAGGCGGTGACCCGGCCGCCGCCGCCGACGAGGGAGGCACCACGCTGTGGACGAAGACGATCATCCTC
GGCGAGCGTTGCCGCGTCGGGGACGACGAGGACGAGGACGGCGGCGGCGGCGCGGTGGTCCGGTGGAGGAGCTACCGGCC
GAGGCAGCCGCGGTCGCTGCCGATGACGCGGAGCAACTCGTTCGCCGGCGTGGGTAGCCGTAGCCTGCAGCTGCAAGGCG
GCGGCGGCGCATCCAGGCCACCACCTGCCGCCGACGTGCCCTTCCATCTAGGTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis