Browse Element(s) Details


OsAffx.11392.5.S1_at

Description tigr:9637.m00840
TID=OsAffx.11392.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1115011/11hypothetical protein
LOC_Os08g050601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11090NANA9+6151732..6152127hypothetical protein
LOC_Os09g11100NANA9+6153314..6159137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g11110OsAffx.20354.1.S1_at2/119+6159766..6162707retrotransposon protein, putative, unclassified
LOC_Os09g11120NANA9+6164470..6165262hypothetical protein
LOC_Os09g11130OsAffx.29799.1.S1_x_at9/119+6166523..6167856hypothetical protein
LOC_Os09g11130OsAffx.29799.1.S1_at7/119+6166523..6167856hypothetical protein
LOC_Os09g11130OsAffx.29799.2.S1_at2/119+6166523..6167856hypothetical protein
LOC_Os09g11130OsAffx.29799.2.S1_x_at1/119+6166523..6167856hypothetical protein
LOC_Os09g11140OsAffx.25834.1.S1_at1/119+6170119..6173633hypothetical protein
LOC_Os09g11150OsAffx.11392.5.S1_at11/119+6175333..6178600hypothetical protein
LOC_Os09g11150OsAffx.11392.2.S1_x_at3/119+6175333..6178600hypothetical protein
LOC_Os09g11160OsAffx.29800.1.S1_at11/119+6183856..6185368expressed protein
LOC_Os09g11170Os.52847.1.S1_at9/119+6194158..6195917IBR domain containing protein, expressed
LOC_Os09g11180OsAffx.29801.1.S1_at11/119+6196403..6196831hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11392.5.S1_at--943--9771Chr09:6177954..6177978 (25 bp)
TAACCGTTACGTGTCTTATTGGAGG
LOC_Os09g11150
OsAffx.11392.5.S1_at--925--6172Chr09:6177975..6177999 (25 bp)
GAGGAAATTTGGTCCGTGCTCTCTA
LOC_Os09g11150
OsAffx.11392.5.S1_at--244--4411Chr09:6178016..6178175 (25 bp)
GCCACTGTTATGTCTGCTATCTTAG
LOC_Os09g11150
OsAffx.11392.5.S1_at--11--10331Chr09:6178202..6178226 (25 bp)
TTCGACGTACTCATAGGTCATCCCA
LOC_Os09g11150
OsAffx.11392.5.S1_at--166--5551Chr09:6178250..6178274 (25 bp)
GAAACTGGTGTCCTCAACTTGAAAA
LOC_Os09g11150
OsAffx.11392.5.S1_at--137--1551Chr09:6178289..6178313 (25 bp)
AGCTTCGTCCCTGTGTTGCAATCGA
LOC_Os09g11150
OsAffx.11392.5.S1_at--729--3171Chr09:6178316..6178340 (25 bp)
AATTGTTTAATGGAGCCTCTTCCTA
LOC_Os09g11150
OsAffx.11392.5.S1_at--522--9751Chr09:6178354..6178378 (25 bp)
TAAGGAAGTGCTGGCCATTTCCCTA
LOC_Os09g11150
OsAffx.11392.5.S1_at--775--10191Chr09:6178377..6178401 (25 bp)
TATTCAAGCCCCTAGAGTCTACTCT
LOC_Os09g11150
OsAffx.11392.5.S1_at--379--3531Chr09:6178519..6178543 (25 bp)
CATGCACTATGCTTTTCTGAACGGT
LOC_Os09g11150
OsAffx.11392.5.S1_at--1126--5451Chr09:6178537..6178561 (25 bp)
GAACGGTGATACGAAGTCTCCAGTC
LOC_Os09g11150
Target Sequence 
TAACCGTTACGTGTCTTATTGGAGGAAATTTGGTCCGTGCTCTCTATAATCCCTCTATTGGTGCCACTGTTATGTCTGCT
ATCTTAGATTTTCATGTATTCGAAATCTCTGATTTCGACGTACTCATAGGTCATCCCATAGAGAAACTCATAGATGTACC
CGAAACTGGTGTCCTCAACTTGAAAATAGAAATAATCATCAGCTTCGTCCCTGTGTTGCAATCGACCAATTGTTTAATGG
AGCCTCTTCCTATTCCCGAGCCAATTAAGGAAGTGCTGGCCATTTCCCTATTCAAGCCCCTAGAGTCTACTCTCGATGAA
TCGATCGAAGAATTCAATAAAGAGGAAGATGAACCTGGAGAAACGATTGATCTGCCAAAAACAGATCAGCCATCACGAAT
CCCAATTGAGCTAAAGCCCTTACCTTCAGGCATGCACTATGCTTTTCTGAACGGTGATACGAAGTCTCCAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11392.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis