Browse Element(s) Details


OsAffx.11453.1.S1_at

Description tigr:9629.m04151
TID=OsAffx.11453.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=myb-like protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4318011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43150Os.51057.1.S1_s_at11/111+24942951..24950000ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43150Os.51057.1.S1_at10/111+24942951..24950000ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43160Os.15014.1.S1_at11/111+24956118..24959175glycoside hydrolase family 28 protein, putative, expressed
LOC_Os01g43170Os.11720.1.S1_a_at11/111+24960613..24966124Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os01g43180OsAffx.11453.1.S1_at11/111+24970072..24971066Myb-like DNA-binding domain containing protein
LOC_Os01g43180Os.37184.1.S1_at2/111+24970072..24971066Myb-like DNA-binding domain containing protein
LOC_Os01g43190OsAffx.23640.4.S1_x_at11/111+24992240..24995165hypothetical protein
LOC_Os01g43190OsAffx.23640.4.S1_at11/111+24992240..24995165hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009913biological_processepidermal cell differentiation
GO:0010063biological_processpositive regulation of trichoblast fate
GO:0030154biological_processcell differentiation
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11453.1.S1_at--60--6251Chr01:24970957..24971018 (25 bp)
GATGGTCGTGAAACAAAAGCCACTT
LOC_Os01g43180
OsAffx.11453.1.S1_at--615--2431Chr01:24970943..24970964 (22 bp)
AAAAGCCACTTCATCCTTGCTTCTC
LOC_Os01g43180
OsAffx.11453.1.S1_at--375--9612Chr01:24970933..24970957 (25 bp)
TCATCCTTGCTTCTCTTAATTACGG
LOC_Os01g43180
OsAffx.11453.1.S1_at--440--4912Chr01:25004990..25005014 (25 bp)
GCTTCTCTTAATTACGGCTATTCAT
NONE
OsAffx.11453.1.S1_at--1129--131Chr01:24970915..24970939 (25 bp)
ATTACGGCTATTCATTTCGTAGCAT
LOC_Os01g43180
OsAffx.11453.1.S1_at--715--111Chr01:24970906..24970930 (25 bp)
ATTCATTTCGTAGCATTATGTCCAA
LOC_Os01g43180
OsAffx.11453.1.S1_at--791--10291Chr01:24970901..24970925 (25 bp)
TTTCGTAGCATTATGTCCAAAAGGG
LOC_Os01g43180
OsAffx.11453.1.S1_at--927--2331Chr01:24970409..24970431 (23 bp)
AAAGAAGTTAATAGCACTGCGCAAA
LOC_Os01g43180
OsAffx.11453.1.S1_at--62--1511Chr01:24970397..24970421 (25 bp)
AGCACTGCGCAAAATTTTGTTCATT
LOC_Os01g43180
OsAffx.11453.1.S1_at--1003--10171Chr01:24970123..24970147 (25 bp)
TATAGCTGGAAGAATACCGGGAAGG
LOC_Os01g43180
OsAffx.11453.1.S1_at--355--3091Chr01:24970111..24970135 (25 bp)
AATACCGGGAAGGACAGCAGAAGAA
LOC_Os01g43180
Target Sequence 
GATGGTCGTGAAACAAAAGCCACTTCATCCTTGCTTCTCTTAATTACGGCTATTCATTTCGTAGCATTATGTCCAAAAGG
GGAAAATGAAGATGCCAGAAAAGAAGTTAATAGCACTGCGCAAAATTTTGTTCATTTCACAGAAGAAGAGGAAGATATTG
TTTTCAGAATGCACAGGCTTGTCGGGAACAGGTGGGAACTTATAGCTGGAAGAATACCGGGAAGGACAGCAGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis