Browse Element(s) Details


OsAffx.23640.4.S1_at

Description tigr:9629.m04152
TID=OsAffx.23640.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4319011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43180OsAffx.11453.1.S1_at11/111+24970072..24971066Myb-like DNA-binding domain containing protein
LOC_Os01g43180Os.37184.1.S1_at2/111+24970072..24971066Myb-like DNA-binding domain containing protein
LOC_Os01g43190OsAffx.23640.4.S1_x_at11/111+24992240..24995165hypothetical protein
LOC_Os01g43190OsAffx.23640.4.S1_at11/111+24992240..24995165hypothetical protein
LOC_Os01g43200NANA1+24998733..24999074hypothetical protein
LOC_Os01g43210Os.55650.1.A1_at6/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.21756.5.A1_x_at5/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.52979.1.S1_at5/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.7307.3.S1_x_at2/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.22143.1.S1_at2/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210OsAffx.4856.1.S1_x_at1/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43210Os.22646.1.S1_x_at1/111+25006438..25013558retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g43220NANA1+25017379..25022910hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23640.4.S1_at--845--9811Chr01:24992415..24992439 (25 bp)
TAAATCTTGGTGAGAAGGGCCGCAT
LOC_Os01g43190
OsAffx.23640.4.S1_at--903--2251Chr01:24992414..24992438 (25 bp)
AAATCTTGGTGAGAAGGGCCGCATG
LOC_Os01g43190
OsAffx.23640.4.S1_at--986--5291Chr01:24992402..24992426 (25 bp)
GAAGGGCCGCATGGGAAAGTTTCCT
LOC_Os01g43190
OsAffx.23640.4.S1_at--271--1011Chr01:24992400..24992424 (25 bp)
AGGGCCGCATGGGAAAGTTTCCTCG
LOC_Os01g43190
OsAffx.23640.4.S1_at--716--8411Chr01:24992398..24992422 (25 bp)
GGCCGCATGGGAAAGTTTCCTCGAG
LOC_Os01g43190
OsAffx.23640.4.S1_at--1116--4111Chr01:24992395..24992419 (25 bp)
CGCATGGGAAAGTTTCCTCGAGATC
LOC_Os01g43190
OsAffx.23640.4.S1_at--127--1491Chr01:24992345..24992369 (25 bp)
AGCAAGGCAGCGACTATTGTTGCCC
LOC_Os01g43190
OsAffx.23640.4.S1_at--587--2931Chr01:24992342..24992366 (25 bp)
AAGGCAGCGACTATTGTTGCCCATG
LOC_Os01g43190
OsAffx.23640.4.S1_at--88--5371Chr01:24992299..24992323 (25 bp)
GAAGAAGTTGAGTTTACAGATGGCA
LOC_Os01g43190
OsAffx.23640.4.S1_at--201--10771Chr01:24992292..24992316 (25 bp)
TTGAGTTTACAGATGGCAACGACGA
LOC_Os01g43190
OsAffx.23640.4.S1_at--713--4051Chr01:24992270..24992294 (25 bp)
CGATGGATGGCACCAACCCGATGTT
LOC_Os01g43190
Target Sequence 
TAAATCTTGGTGAGAAGGGCCGCATGGGAAAGTTTCCTCGAGATCCAGCCTTCCCCCTGTTGAGGTTCTCAGCAAGGCAG
CGACTATTGTTGCCCATGAACTTGTGGACGACAGAGGAAGAAGTTGAGTTTACAGATGGCAACGACGATGGATGGCACCA
ACCCGATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23640.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis