Browse Element(s) Details


OsAffx.11499.1.S1_at

Description tigr:9629.m04524
TID=OsAffx.11499.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphoglycerate mutase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4719010/11phosphoglycerate/bisphosphoglycerate mutase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47140Os.45173.1.S1_x_at1/111+27271646..27273998retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47150NANA1+27274266..27278693retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47160Os.31312.5.S1_x_at6/111+27282848..27285874retrotransposon protein, putative, unclassified
LOC_Os01g47160Os.31312.2.S1_x_at1/111+27282848..27285874retrotransposon protein, putative, unclassified
LOC_Os01g47170NANA1+27286777..27292940retrotransposon protein, putative, unclassified
LOC_Os01g47180OsAffx.11498.1.S1_x_at11/111+27295063..272957643'-5' exonuclease family protein, expressed
LOC_Os01g47190OsAffx.11499.1.S1_at10/111+27298488..27301030phosphoglycerate/bisphosphoglycerate mutase family protein, putative, expressed
LOC_Os01g47200Os.27264.1.A1_at9/111+27302464..27304899transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g47210NANA1+27308167..27308427hypothetical protein
LOC_Os01g47220NANA1+27311754..27313103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47230NANA1+27313704..27315510retrotransposon protein, putative, unclassified
LOC_Os01g47240NANA1+27318809..27322045transposon protein, putative, unclassified
LOC_Os01g47250NANA1+27322692..27328847retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11499.1.S1_at--287--4471Chr01:27298665..27298689 (25 bp)
GCCTGCGAGGACGACTGCTGGATAT
LOC_Os01g47190
OsAffx.11499.1.S1_at--277--5371Chr01:27298966..27298990 (25 bp)
GAAGAGCCTAGAAACATTGCCTGAG
LOC_Os01g47190
OsAffx.11499.1.S1_at--394--4971Chr01:27299727..27299751 (25 bp)
GCATCAGACAGTATTTCGCCAGACA
LOC_Os01g47190
OsAffx.11499.1.S1_at--900--371Chr01:27299751..27299775 (25 bp)
ATCAAGCCACCTCCTATTAGTGATG
LOC_Os01g47190
OsAffx.11499.1.S1_at--74--6711Chr01:27299808..27299832 (25 bp)
GTTCGGGTAACGCAGCTCATGTCAA
LOC_Os01g47190
OsAffx.11499.1.S1_at--852--6471Chr01:27299856..27299880 (25 bp)
GATACCGTTGTCATTGTTTCACCAG
LOC_Os01g47190
OsAffx.11499.1.S1_at--404--5611Chr01:27299886..27299910 (25 bp)
GACAACCTGTCAATTCTACAAGCTG
LOC_Os01g47190
OsAffx.11499.1.S1_at--998--8811NONE
TGATAGGGCTAGACCTCCGGAGGCA
NONE
OsAffx.11499.1.S1_at--288--931Chr01:27300129..27300153 (25 bp)
AGGCATAGCAGCCTATTCTTTCAGC
LOC_Os01g47190
OsAffx.11499.1.S1_at--365--1651Chr01:27300151..27300175 (25 bp)
AGCCCGGTGAGGTTCGACCTGTTGA
LOC_Os01g47190
OsAffx.11499.1.S1_at--1081--2611Chr01:27300202..27300226 (25 bp)
AACCTGCCTCTACTGTTTTCAAGTG
LOC_Os01g47190
Target Sequence 
GCCTGCGAGGACGACTGCTGGATATGGCCCTCCATCACCCAGCGCGCCTACCAGGCCGCCGAGATCATCGCCGCCGCCAA
CGAGATCAACCGCAGNNNNNTNGNANNNNNGNANNGNTTCTTAGATGCGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCC
TAGAAACATTGCCTGAGGTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGTGATGGTACACCA
AATGAGAGTGTTGCAGATGTATTTGTTCGGGTAACGCAGCTCATGTCAATACTAGAGACTCAGTACTCGGGGGATACCGT
TGTCATTGTTTCACCAGATTCTGACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAGGCATAGCA
GCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGCCAGCATACCTGAATACAAACAACCTGCCTCTACTGTT
TTCAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis