Browse Element(s) Details


OsAffx.11525.1.S1_at

Description tigr:9629.m04736
TID=OsAffx.11525.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g490807/11hypothetical protein
LOC_Os02g248903/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49060Os.6811.1.S1_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.6811.1.S1_s_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.41701.1.S1_x_at9/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.33918.1.S1_x_at6/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.53602.1.S1_at1/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49070NANA1+28524828..28525142hypothetical protein
LOC_Os01g49080OsAffx.11525.1.S1_at7/111+28535960..28537802hypothetical protein
LOC_Os01g49080OsAffx.29394.1.S1_s_at1/111+28535960..28537802hypothetical protein
LOC_Os01g49090NANA1+28545305..28547063hypothetical protein
LOC_Os01g49110Os.53602.1.S1_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.33918.1.S1_x_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.41701.1.S1_x_at3/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49120Os.14869.1.S1_at11/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49120Os.41694.1.S1_at8/111+28561908..28565479MATE efflux family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11525.1.S1_at--1135--1612Chr01:28536018..28536042 (25 bp)
AGCGGCGGTTGGAGCTCCAGCTTCA
LOC_Os01g49080
OsAffx.11525.1.S1_at--260--4691Chr01:28536019..28536043 (25 bp)
GCGGCGGTTGGAGCTCCAGCTTCAA
LOC_Os01g49080
OsAffx.11525.1.S1_at--4--3911Chr01:28536020..28536044 (25 bp)
CGGCGGTTGGAGCTCCAGCTTCAAC
LOC_Os01g49080
OsAffx.11525.1.S1_at--905--5991NONE
GAGACGACCGACAGGGATCAGCCTT
NONE
OsAffx.11525.1.S1_at--861--1391NONE
AGACGACCGACAGGGATCAGCCTTC
NONE
OsAffx.11525.1.S1_at--34--5831NONE
GACCGACAGGGATCAGCCTTCTCGG
NONE
OsAffx.11525.1.S1_at--272--46112Chr09:13388871..13388897 (25 bp)
GCGAGGTCAACGGTTTTGGCACGGT
NONE
OsAffx.11525.1.S1_at--1062--78113Chr12:18510084..18510110 (25 bp)
GGTCAACGGTTTTGGCACGGTTGAT
NONE
OsAffx.11525.1.S1_at--540--70713Chr12:18510085..18510111 (25 bp)
GTCAACGGTTTTGGCACGGTTGATA
NONE
OsAffx.11525.1.S1_at--536--4591NONE
GCTCAAGAGTAAAAAAGGAAACCAT
NONE
OsAffx.11525.1.S1_at--540--5551Chr01:28537746..28537770 (25 bp)
GAAACCATATGTGGGGACAACCAAT
LOC_Os01g49080
Target Sequence 
AGCGGCGGTTGGAGCTCCAGCTTCAACGGCTGGAGGTGGGAGACGACCGACAGGGATCAGCCTTCTCGGCGAGGTCAACG
GTTTTGGCACGGTTGATAACCAGAGGAGACGTGGTGCTACGATTGCGGGGCTCAAGAGTAAAAAAGGAAACCATATGTGG
GGACAACCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis