Browse Element(s) Details


OsAffx.11537.1.S1_at

Description tigr:9629.m04819
TID=OsAffx.11537.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4986011/11hypothetical protein
LOC_Os02g310101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49820Os.41653.1.S1_x_at11/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.41653.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.20321.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49830Os.8019.1.S1_at11/111+28946388..28947953DNA-binding protein RAV1, putative, expressed
LOC_Os01g49840OsAffx.23732.1.S1_at11/111+28949350..28949637hypothetical protein
LOC_Os01g49849NANA1+28952420..28952696NA
LOC_Os01g49860OsAffx.11537.1.S1_at11/111+28956419..28957326hypothetical protein
LOC_Os01g49870OsAffx.21485.1.S1_at10/111+28972043..28975273transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49880OsAffx.870.2.S1_at11/111+28977628..28979732expressed protein
LOC_Os01g49890Os.27749.1.S1_at11/111+28980894..28982795Threonine synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11537.1.S1_at--1064--9211Chr01:28957272..28957296 (25 bp)
TCCAGGCTGGTCACAAAGGAAGTGC
LOC_Os01g49860
OsAffx.11537.1.S1_at--1040--7451Chr01:28957210..28957234 (25 bp)
GTGTGATAATGTACCTCTGAAAGTC
LOC_Os01g49860
OsAffx.11537.1.S1_at--315--5571Chr01:28957192..28957216 (25 bp)
GAAAGTCAAATTTCCTGATCTCTTT
LOC_Os01g49860
OsAffx.11537.1.S1_at--806--9251Chr01:28957180..28957204 (25 bp)
TCCTGATCTCTTTGAAATTAGTCAT
LOC_Os01g49860
OsAffx.11537.1.S1_at--44--1011Chr01:28957067..28957091 (25 bp)
AGGTTAGGGAGCTTGTAGAGTTAAT
LOC_Os01g49860
OsAffx.11537.1.S1_at--921--7611Chr01:28957040..28957064 (25 bp)
GGGAAGCTCAACTAGGAACTGAGAA
LOC_Os01g49860
OsAffx.11537.1.S1_at--656--2531Chr01:28956554..28957048 (25 bp)
AACTGAGAATGACAAGGTGGCCTAC
LOC_Os01g49860
OsAffx.11537.1.S1_at--1158--2871Chr01:28956541..28956564 (24 bp)
AAGGTGGCCTACAAAGCTCTGTCTT
LOC_Os01g49860
OsAffx.11537.1.S1_at--517--4812Chr02:18515880..18515904 (25 bp)
GCTCTGTCTTTCTCTCAGAAGTGGA
LOC_Os02g31010
OsAffx.11537.1.S1_at--742--9551Chr01:28956520..28956544 (25 bp)
TCTTTCTCTCAGAAGTGGAGCGTGC
LOC_Os01g49860
OsAffx.11537.1.S1_at--219--1611Chr01:28956452..28956476 (25 bp)
AGCTGGGCTAGGGAAACTGGTTCAA
LOC_Os01g49860
Target Sequence 
TCCAGGCTGGTCACAAAGGAAGTGCACAGTGGGAGAGATGTGAGTTTTTGGAAGGATGTTTGGTGTGATAATGTACCTCT
GAAAGTCAAATTTCCTGATCTCTTTGAAATTAGTCATGATCAAAATGCTACTGTCAAGGATACGGTGGTAGGCAGAGAAT
GGAGCTTGGAGTTTAGAAGAAATTTAGATGAACAAAGGGTTAGAGAGGTTAGGGAGCTTGTAGAGTTAATTGGGGAAGCT
CAACTAGGAACTGAGAATGACAAGGTGGCCTACAAAGCTCTGTCTTTCTCTCAGAAGTGGAGCGTGCTGTTAAGAGAGGA
AGAAAGAGTAATCTTGGGAGGGTGGCATGAAGCTGGGCTAGGGAAACTGGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis