Browse Element(s) Details


OsAffx.11551.1.S1_at

Description tigr:9629.m04927
TID=OsAffx.11551.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5088011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50840Os.1880.2.S1_a_at11/111+29528956..29530650expressed protein
LOC_Os01g50850NANA1+29535834..29536220hypothetical protein
LOC_Os01g50860Os.27607.2.S1_x_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50860Os.27607.1.A1_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50870NANA1+29550035..29550346hypothetical protein
LOC_Os01g50880OsAffx.11551.1.S1_at11/111+29553402..29553811hypothetical protein
LOC_Os01g50890NANA1+29557804..29558064hypothetical protein
LOC_Os01g50900Os.47750.1.A1_at11/111+29558747..29559638Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os01g50910Os.10933.1.S1_at11/111+29559895..29561103Late embryogenesis abundant protein, expressed
LOC_Os01g50930Os.7502.2.S1_at11/111+29566915..29573689expressed protein
LOC_Os01g50930Os.7502.1.S1_at11/111+29566915..29573689expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11551.1.S1_at--130--9772Chr01:29553443..29553464 (22 bp)
TAATCGATCGATCAGGTTGGTTGAG
LOC_Os01g50880
OsAffx.11551.1.S1_at--621--3052Chr01:29553444..29553464 (21 bp)
AATCGATCGATCAGGTTGGTTGAGT
LOC_Os01g50880
OsAffx.11551.1.S1_at--368--9392Chr01:29553501..29553521 (21 bp)
TCGATCGATCAGGTTGGTTGAGTTT
LOC_Os01g50880
OsAffx.11551.1.S1_at--744--511Chr01:29553501..29553524 (24 bp)
ATCGATCAGGTTGGTTGAGTTTGCT
LOC_Os01g50880
OsAffx.11551.1.S1_at--332--411Chr01:29553504..29553528 (25 bp)
ATCAGGTTGGTTGAGTTTGCTGATC
LOC_Os01g50880
OsAffx.11551.1.S1_at--900--8891Chr01:29553515..29553539 (25 bp)
TGAGTTTGCTGATCCATGCCTCCAA
LOC_Os01g50880
OsAffx.11551.1.S1_at--684--6071Chr01:29553516..29553540 (25 bp)
GAGTTTGCTGATCCATGCCTCCAAG
LOC_Os01g50880
OsAffx.11551.1.S1_at--988--1191Chr01:29553517..29553541 (25 bp)
AGTTTGCTGATCCATGCCTCCAAGC
LOC_Os01g50880
OsAffx.11551.1.S1_at--1161--10271Chr01:29553519..29553543 (25 bp)
TTTGCTGATCCATGCCTCCAAGCGC
LOC_Os01g50880
OsAffx.11551.1.S1_at--162--9211Chr01:29553535..29553559 (25 bp)
TCCAAGCGCCTAGAACACCAGAAGT
LOC_Os01g50880
OsAffx.11551.1.S1_at--637--4371Chr01:29553536..29553560 (25 bp)
CCAAGCGCCTAGAACACCAGAAGTC
LOC_Os01g50880
Target Sequence 
TAATCGATCGATCAGGTTGGTTGAGTTTGCTGATCCATGCCTCCAAGCGCCTAGAACACCAGAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis