Browse Element(s) Details


OsAffx.11568.2.S1_at

Description tigr:9629.m05035
TID=OsAffx.11568.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5194011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51890Os.11023.1.S2_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51890Os.11023.1.S1_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51904Os.50521.1.S1_at2/111+30166253..30168706hypothetical protein
LOC_Os01g51920Os.13835.2.S2_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S3_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S1_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51930OsAffx.23756.1.S1_at10/111+30179099..30179906hypothetical protein
LOC_Os01g51930OsAffx.21539.1.S1_x_at2/111+30179099..30179906hypothetical protein
LOC_Os01g51940OsAffx.11568.2.S1_at11/111+30181508..30182541hypothetical protein
LOC_Os01g51950Os.46012.2.S1_x_at7/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.46012.3.S1_x_at5/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.27088.1.A1_x_at4/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51960OsAffx.11569.1.S1_at11/111+30195755..30196102hypothetical protein
LOC_Os01g51970OsAffx.23757.1.S1_at8/111+30198011..30200500hypothetical protein
LOC_Os01g51980Os.14115.1.S1_at11/111+30201333..30204331Allinase, C-terminal domain containing protein, expressed
LOC_Os01g51990OsAffx.2307.1.S1_at8/111+30205282..30207127AN1-like Zinc finger family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11568.2.S1_at--397--2191Chr01:30182254..30182278 (25 bp)
ACAAATTCAGAAACAGGACCAGAGA
LOC_Os01g51940
OsAffx.11568.2.S1_at--861--8091Chr01:30182269..30182293 (25 bp)
GGACCAGAGAACATAATCACAAACA
LOC_Os01g51940
OsAffx.11568.2.S1_at--877--7551Chr01:30182314..30182338 (25 bp)
GGGCCGAATAACACTGAAAAATGGA
LOC_Os01g51940
OsAffx.11568.2.S1_at--125--2311Chr01:30182332..30182356 (25 bp)
AAATGGACCATCATCAGCCAACGAA
LOC_Os01g51940
OsAffx.11568.2.S1_at--404--411Chr01:30182341..30182365 (25 bp)
ATCATCAGCCAACGAACGGTTGCTC
LOC_Os01g51940
OsAffx.11568.2.S1_at--426--2571Chr01:30182355..30182379 (25 bp)
AACGGTTGCTCGCTTTCTGGAAGAA
LOC_Os01g51940
OsAffx.11568.2.S1_at--883--5371Chr01:30182377..30182401 (25 bp)
GAAGCAAAAGCACAGACGGCCAAAA
LOC_Os01g51940
OsAffx.11568.2.S1_at--952--4311Chr01:30182395..30182419 (25 bp)
GCCAAAAATATCACGTACCACGCCA
LOC_Os01g51940
OsAffx.11568.2.S1_at--1048--6951Chr01:30182409..30182433 (25 bp)
GTACCACGCCAAAATATTCCGAGGA
LOC_Os01g51940
OsAffx.11568.2.S1_at--477--2451Chr01:30182456..30182480 (25 bp)
AACAAATGGTAGGAGCCTGCGTTAA
LOC_Os01g51940
OsAffx.11568.2.S1_at--1142--10011Chr01:30182465..30182489 (25 bp)
TAGGAGCCTGCGTTAAGGGTAAAGA
LOC_Os01g51940
Target Sequence 
ACAAATTCAGAAACAGGACCAGAGAACATAATCACAAACATAGAACAAGAACCAGAGCTGGGGCCGAATAACACTGAAAA
ATGGACCATCATCAGCCAACGAACGGTTGCTCGCTTTCTGGAAGAAGCAAAAGCACAGACGGCCAAAAATATCACGTACC
ACGCCAAAATATTCCGAGGATTTTTCATAAAAGAAAACGAGAAACAAATGGTAGGAGCCTGCGTTAAGGGTAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11568.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis