Browse Element(s) Details


OsAffx.11592.1.S1_x_at

Description gb:NM_191145.1
DB_XREF= gi:34909373
GEN=P0638D12.19
TID=OsAffx.11592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0638D12.19 (P0638D12.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g043602/11phosphate:H+ symporter family protein, expressed
LOC_Os08g450001/11phosphate:H+ symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04320Os.53344.1.S1_at10/113+1969707..1975130hypothetical protein
LOC_Os03g04330OsAffx.24961.1.S1_at11/113+1976054..1976536hypothetical protein
LOC_Os03g04340Os.6433.1.S1_at11/113+1982232..198409524-methylenesterol C-methyltransferase 2, putative, expressed
LOC_Os03g04350OsAffx.24962.1.S1_at11/113+1987355..1987722hypothetical protein
LOC_Os03g04350Os.25910.1.S1_s_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04350OsAffx.16321.1.S1_x_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04360Os.50503.1.S1_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360Os.50503.1.S2_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.20487.1.S1_s_at3/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.11592.1.S1_x_at2/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04370Os.55093.1.S1_at11/113+1993159..1993854expressed protein
LOC_Os03g04380Os.51396.1.S1_at11/113+1994068..1994713Complex 1 protein containing protein, expressed
LOC_Os03g04390Os.49142.1.S1_at11/113+1994759..1997434pentatricopeptide, putative, expressed
LOC_Os03g04400Os.47349.1.S1_at9/113+1997847..2001075DnaJ domain containing protein, expressed
LOC_Os03g04410Os.7192.1.S1_at11/113+2005928..2012682Aconitate hydratase, cytoplasmic, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11592.1.S1_x_at--609--631NONE
ATGCTTCGCGTGGTCGGCTCGATGA
NONE
OsAffx.11592.1.S1_x_at--514--9331NONE
TCGCGTGGTCGGCTCGATGAACTCA
NONE
OsAffx.11592.1.S1_x_at--123--7511NONE
GTGGTCGGCTCGATGAACTCACCGT
NONE
OsAffx.11592.1.S1_x_at--174--4813Chr01:31282377..31282401 (25 bp)
GCTCGATGAACTCACCGTCGTCCGA
NONE
OsAffx.11592.1.S1_x_at--198--1631Chr01:31282418..31282442 (25 bp)
AGCGGCTTCTCGACCTCGATGATGA
NONE
OsAffx.11592.1.S1_x_at--222--10591Chr01:31282424..31282448 (25 bp)
TTCTCGACCTCGATGATGACAACGA
NONE
OsAffx.11592.1.S1_x_at--818--673Chr01:31282439..31282463 (25 bp)
ATGACAACGACAACGACGACGTGGT
NONE
OsAffx.11592.1.S1_x_at--224--1872Chr01:31282451..31282567 (25 bp)
ACGACGACGTGGTGGGCGCGATCAT
NONE
OsAffx.11592.1.S1_x_at--311--7914Chr08:28112769..28112793 (25 bp)
GGTTCCTGTACCTGGCGCAGAGCCC
LOC_Os08g45000
OsAffx.11592.1.S1_x_at--877--1931Chr01:31282627..31282651 (25 bp)
ACGGCTACCTGCCAGGCATCGGCGT
NONE
OsAffx.11592.1.S1_x_at--61--1673Chr01:31282720..31282744 (25 bp)
AGCCCAAGGGCAAGTCGCTCGAGGA
NONE
Target Sequence 
ATGCTTCGCGTGGTCGGCTCGATGAACTCACCGTCGTCCGACCACTCCTCTTCCTGCAGCGGCTTCTCGACCTCGATGAT
GACAACGACAACGACGACGTGGTGGGCGCGATCATCGGGTCGTTCGGGTTCCTGTACCTGGCGCAGAGCCCTGACCCGGC
CAAGGCGGCGGCGCACGGCTACCTGCCAGGCATCGGCGTCCGCAACTCGCTGTTCACGCTCGCCGGCTGCAGCTTGCTCG
GCTTCCTCCTCACCTTCCTGGTGCCCGAGCCCAAGGGCAAGTCGCTCGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11592.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis