Browse Element(s) Details


OsAffx.11634.1.S1_x_at

Description gb:NM_191498.1
DB_XREF= gi:34910079
GEN=B1100D10.15
TID=OsAffx.11634.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1100D10.15 (B1100D10.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g573248/11hypothetical protein
LOC_Os01g572948/11hypothetical protein
LOC_Os12g081402/11pentatricopeptide, putative, expressed
LOC_Os12g329401/11Sugar transporter family protein, expressed
LOC_Os03g138301/11pentatricopeptide, putative, expressed
LOC_Os11g078701/11Type III restriction enzyme, res subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57294OsAffx.11634.2.S1_x_at11/111+33442053..33442835hypothetical protein
LOC_Os01g57294OsAffx.11634.1.S1_x_at8/111+33442053..33442835hypothetical protein
LOC_Os01g57310Os.35231.1.S1_at10/111+33447347..33451219Rp1, putative
LOC_Os01g57324OsAffx.11634.2.S1_x_at11/111+33462681..33463463hypothetical protein
LOC_Os01g57324OsAffx.11634.1.S1_x_at8/111+33462681..33463463hypothetical protein
LOC_Os01g57340Os.35231.1.S1_at2/111+33467975..33471847Rp1, putative
LOC_Os01g57350Os.26990.1.S1_at11/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57350OsAffx.9397.1.S1_at10/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57350Os.47465.1.S1_at9/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57360NANA1+33481126..33485168Acyltransferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0004525molecular_functionribonuclease III activity
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0008026molecular_functionATP-dependent helicase activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11634.1.S1_x_at--831--1633Chr12:4163173..4163197 (25 bp)
AGCGTGGTCGCTTGGAACGCCATGA
LOC_Os12g08140
OsAffx.11634.1.S1_x_at--44--4134Chr12:4163181..4163205 (25 bp)
CGCTTGGAACGCCATGATTTCTGGG
LOC_Os12g08140
OsAffx.11634.1.S1_x_at--1101--8312Chr01:33462905..33462929 (25 bp)
GGCTCAGGTGGTGCCTGATTCCGCC
LOC_Os01g57324
OsAffx.11634.1.S1_x_at--1154--8812Chr01:33462920..33462944 (25 bp)
TGATTCCGCCACGTTTGTTGCTACA
LOC_Os01g57324
OsAffx.11634.1.S1_x_at--713--10792Chr01:33462934..33462958 (25 bp)
TTGTTGCTACACTCTACTCGCCGAA
LOC_Os01g57324
OsAffx.11634.1.S1_x_at--511--9532Chr01:33462946..33462970 (25 bp)
TCTACTCGCCGAAGTTCGATTCCCT
LOC_Os01g57324
OsAffx.11634.1.S1_x_at--617--9334Chr11:4017815..4017835 (21 bp)
TCGCCGCCGGGAGATTCGTGGAGGT
LOC_Os11g07870
OsAffx.11634.1.S1_x_at--181--8733Chr01:33463333..33463357 (25 bp)
TGTCGGCTAGCCTGCGCAGATCGAG
LOC_Os01g57324
OsAffx.11634.1.S1_x_at--578--9112Chr01:33463345..33463652 (25 bp)
TGCGCAGATCGAGAAATTTTTTCCC
NONE
OsAffx.11634.1.S1_x_at--937--9332Chr01:33463353..33463660 (25 bp)
TCGAGAAATTTTTTCCCGTCTCGTG
NONE
OsAffx.11634.1.S1_x_at--487--7152Chr01:33463653..33463677 (25 bp)
GTCTCGTGCCATTGACTCGCGGTGC
NONE
Target Sequence 
AGCGTGGTCGCTTGGAACGCCATGATTTCTGGGGAGATGCAGGTGGCTCAGGTGGTGCCTGATTCCGCCACGTTTGTTGC
TACACTCTACTCGCCGAAGTTCGATTCCCTCCTCGTCGCCGGCCCGCGCAAGCTGGCCCACGCGCGCCTCATCGTCGCCA
GCCACGGCAGCTTGCTCCCGCTCGTCACCAAGCTCGCCACCCTCACCGTGGCCGCCGGCGCCGTGCACTACGCGCACCTC
CTCGCGGCGTCCCACCACGCCTGCGACTTCTTCTTTCTCTCCTTGCTCACCTGCGCCGCCGCACATCGCAACCTCCCCGG
CGCGTCCATCGCCGCCGGGAGATTCGTGGAGGTGGTGGGGGCCAGCGGTGGCGAACTGGGCGGAGACGGCGTGGCCGACG
ACGCCGCCGCCGCCGCCGCGGCCCACCTCGCGGAGCGCGCGGCGGGCGCGCCCCACCGGCCTCCTCCCCTCCTGTCGGCT
AGCCTGCGCAGATCGAGAAATTTTTTCCCGTCTCGTGCCATTGACTCGCGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11634.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis