Browse Element(s) Details


Os.26990.1.S1_at

Description gb:AK107062.1
DB_XREF= gi:32992271
TID=Os.26990.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-E02, full insert sequence.
FL= gb:AK072068.1 gb:AK107062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5735011/11Diacylglycerol kinase catalytic domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57310Os.35231.1.S1_at10/111+33447347..33451219Rp1, putative
LOC_Os01g57324OsAffx.11634.2.S1_x_at11/111+33462681..33463463hypothetical protein
LOC_Os01g57324OsAffx.11634.1.S1_x_at8/111+33462681..33463463hypothetical protein
LOC_Os01g57340Os.35231.1.S1_at2/111+33467975..33471847Rp1, putative
LOC_Os01g57350Os.26990.1.S1_at11/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57350OsAffx.9397.1.S1_at10/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57350Os.47465.1.S1_at9/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57360NANA1+33481126..33485168Acyltransferase family protein, expressed
LOC_Os01g57370OsAffx.23819.1.S1_at11/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57370OsAffx.23819.2.S1_x_at2/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57380OsAffx.2349.2.A1_at11/111+33501159..33501659hypothetical protein
LOC_Os01g57390OsAffx.11635.1.S1_x_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57390OsAffx.11635.1.S1_at11/111+33504070..33504593LysM domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0030148biological_processsphingolipid biosynthesis
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0017050molecular_functionD-erythro-sphingosine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26990.1.S1_at--1077--6711Chr01:33473437..33473461 (25 bp)
GTTCTCAGATGGCTACATGGATGCA
LOC_Os01g57350
Os.26990.1.S1_at--400--7631Chr01:33473402..33473426 (25 bp)
GGGACTGTCCAAAGGCTGATCTTTT
LOC_Os01g57350
Os.26990.1.S1_at--9--4751Chr01:33473388..33473412 (25 bp)
GCTGATCTTTTAGCCCTACTGATGA
LOC_Os01g57350
Os.26990.1.S1_at--573--6031Chr01:33473144..33473168 (25 bp)
GAGATGTCTTCGGTTATCACCAGGC
LOC_Os01g57350
Os.26990.1.S1_at--721--10411Chr01:33473131..33473155 (25 bp)
TTATCACCAGGCCAGCTTGTGGAGA
LOC_Os01g57350
Os.26990.1.S1_at--774--5751Chr01:33473023..33473047 (25 bp)
GACGTGATGGGTTATGGCCCTTCCA
LOC_Os01g57350
Os.26990.1.S1_at--445--8471Chr01:33473009..33473033 (25 bp)
TGGCCCTTCCATTCAGATGACAGTG
LOC_Os01g57350
Os.26990.1.S1_at--606--5091Chr01:33472985..33473009 (25 bp)
GCACCGAGCGTTGGCCACAATGTAT
LOC_Os01g57350
Os.26990.1.S1_at--647--731Chr01:33472966..33472990 (25 bp)
ATGTATTGTCCCAAATGACCCCTTT
LOC_Os01g57350
Os.26990.1.S1_at--590--3771Chr01:33472936..33472960 (25 bp)
CTCTCTCTCCCGAGATTGGAGTATT
LOC_Os01g57350
Os.26990.1.S1_at--8--10231Chr01:33472911..33472935 (25 bp)
TATTCGTGCCAATTGTTTCGCTCTT
LOC_Os01g57350
Target Sequence 
GTTCTCAGATGGCTACATGGATGCAGTCATAGTCAGGGACTGTCCAAAGGCTGATCTTTTAGCCCTACTGATGAAGATGG
GCGATGGGAGTCATGTAAAATCACCATACGTTACGTATCTAAAGGTGAGATGTCTTCGGTTATCACCAGGCCAGCTTGTG
GAGAATCCAAAACGAGGTGGCATAATAGACGTGGACGGGGAGGCTATCGCTAGAGGAGAAGGAACGTACGGCAAAAACCA
GAAACAGGACGTGATGGGTTATGGCCCTTCCATTCAGATGACAGTGCACCGAGCGTTGGCCACAATGTATTGTCCCAAAT
GACCCCTTTATCTCCTCTCTCTCCCGAGATTGGAGTATTTATTCGTGCCAATTGTTTCGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis