Browse Element(s) Details


OsAffx.23819.1.S1_at

Description gb:NM_191507.1
DB_XREF= gi:34910097
GEN=B1100D10.24
TID=OsAffx.23819.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative cyclic nucleotide and calmodulin-regulated ion channel (B1100D10.24), mRNA.
PROD=putative cyclic nucleotide andcalmodulin-regulated ion channel
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5737011/11cation channel family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57340Os.35231.1.S1_at2/111+33467975..33471847Rp1, putative
LOC_Os01g57350Os.26990.1.S1_at11/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57350OsAffx.9397.1.S1_at10/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57350Os.47465.1.S1_at9/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57360NANA1+33481126..33485168Acyltransferase family protein, expressed
LOC_Os01g57370OsAffx.23819.1.S1_at11/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57370OsAffx.23819.2.S1_x_at2/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57380OsAffx.2349.2.A1_at11/111+33501159..33501659hypothetical protein
LOC_Os01g57390OsAffx.11635.1.S1_x_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57390OsAffx.11635.1.S1_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57400OsAffx.9395.1.S1_at11/111+33508188..33508577LysM domain containing protein, expressed
LOC_Os01g57410Os.26876.1.S1_at11/111+33509437..33512989Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os01g57420Os.14427.1.S2_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57420Os.14427.1.S1_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57430OsAffx.23820.1.S1_at11/111+33520932..33521250hypothetical protein
LOC_Os01g57440OsAffx.23821.1.S1_at11/111+33522176..33524733DNA repair metallo-beta-lactamase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0016020cellular_componentmembrane
GO:0005216molecular_functionion channel activity
GO:0005221molecular_functionintracellular cyclic nucleotide activated cation channel activity
GO:0005222molecular_functionintracellular cAMP activated cation channel activity
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005261molecular_functioncation channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0008324molecular_functioncation transporter activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23819.1.S1_at--510--5831Chr01:33495918..33495942 (25 bp)
GACCTGGTGCTCGAGAACATCTGTG
LOC_Os01g57370
OsAffx.23819.1.S1_at--1093--9091Chr01:33495911..33495935 (25 bp)
TGCTCGAGAACATCTGTGACAGGGT
LOC_Os01g57370
OsAffx.23819.1.S1_at--581--8671Chr01:33495897..33495921 (25 bp)
TGTGACAGGGTCAAGTCCCTCGTAT
LOC_Os01g57370
OsAffx.23819.1.S1_at--438--9731Chr01:33495887..33495911 (25 bp)
TCAAGTCCCTCGTATTCCCCAAAGG
LOC_Os01g57370
OsAffx.23819.1.S1_at--170--9251Chr01:33495788..33495896 (25 bp)
TCCCCAAAGGAGAAATTATCGTTAG
LOC_Os01g57370
OsAffx.23819.1.S1_at--913--9071Chr01:33495773..33495795 (23 bp)
TTATCGTTAGAGAGGGCGACCCGGT
LOC_Os01g57370
OsAffx.23819.1.S1_at--265--3571Chr01:33495733..33495757 (25 bp)
CATAGTGCGAGGGCACCTGCAGAGC
LOC_Os01g57370
OsAffx.23819.1.S1_at--862--5931Chr01:33495712..33495736 (25 bp)
GAGCAGCCAGGTGCTGAGGACCGGC
LOC_Os01g57370
OsAffx.23819.1.S1_at--5--971Chr01:33495696..33495720 (25 bp)
AGGACCGGCGCCACGAGCTGCTGCA
LOC_Os01g57370
OsAffx.23819.1.S1_at--244--4851Chr01:33495506..33495530 (25 bp)
GCTACACCTTCACCAACGACAGGGT
LOC_Os01g57370
OsAffx.23819.1.S1_at--609--4831Chr01:33495467..33495491 (25 bp)
GCTACTACTCGCACGGGTGGCGCAC
LOC_Os01g57370
Target Sequence 
GACCTGGTGCTCGAGAACATCTGTGACAGGGTCAAGTCCCTCGTATTCCCCAAAGGAGAAATTATCGTTAGAGAGGGCGA
CCCGGTGCAGAGGATGCTGTTCATAGTGCGAGGGCACCTGCAGAGCAGCCAGGTGCTGAGGACCGGCGCCACGAGCTGCT
GCACGCTGGGGCCGGGCAACTTCAGCGGGGACGAGCTGCTGTCGTGGTGCATGCGGCGGCCGTTCCTGGAGCGGCTGCCG
GCGTCGTCGTCGACGCTGGTGACGATGGAGAGCACGGAGGCGTTCGGGCTGGAGGCCGCGGACGTCAAGTACGTGACGCA
GCACTTCCGCTACACCTTCACCAACGACAGGGTGCGGCGCAGCGCGCGCTACTACTCGCACGGGTGGCGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis