Browse Element(s) Details


OsAffx.9395.1.S1_at

Description tigr:9629.m05622
TID=OsAffx.9395.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=LysM domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5740011/11LysM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57360NANA1+33481126..33485168Acyltransferase family protein, expressed
LOC_Os01g57370OsAffx.23819.1.S1_at11/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57370OsAffx.23819.2.S1_x_at2/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57380OsAffx.2349.2.A1_at11/111+33501159..33501659hypothetical protein
LOC_Os01g57390OsAffx.11635.1.S1_x_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57390OsAffx.11635.1.S1_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57400OsAffx.9395.1.S1_at11/111+33508188..33508577LysM domain containing protein, expressed
LOC_Os01g57410Os.26876.1.S1_at11/111+33509437..33512989Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os01g57420Os.14427.1.S2_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57420Os.14427.1.S1_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57430OsAffx.23820.1.S1_at11/111+33520932..33521250hypothetical protein
LOC_Os01g57440OsAffx.23821.1.S1_at11/111+33522176..33524733DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g57450Os.34258.1.S1_at10/111+33525414..33528581universal stress protein, putative, expressed
LOC_Os01g57460Os.40269.1.S1_at10/111+33532042..33534551Frataxin homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9395.1.S1_at--377--9671Chr01:33508384..33508501 (25 bp)
TCACCGCGCACCACGGTTACGTGGT
LOC_Os01g57400
OsAffx.9395.1.S1_at--866--7791Chr01:33508338..33508362 (25 bp)
GGTCCCGGCGCTGACATGCAACAAG
LOC_Os01g57400
OsAffx.9395.1.S1_at--838--4191Chr01:33508335..33508359 (25 bp)
CCCGGCGCTGACATGCAACAAGGTG
LOC_Os01g57400
OsAffx.9395.1.S1_at--578--4131Chr01:33508330..33508354 (25 bp)
CGCTGACATGCAACAAGGTGCACGG
LOC_Os01g57400
OsAffx.9395.1.S1_at--1036--7311Chr01:33508304..33508328 (25 bp)
GTGCAGGCGTCCGAGACGTGCTTCT
LOC_Os01g57400
OsAffx.9395.1.S1_at--329--911Chr01:33508300..33508324 (25 bp)
AGGCGTCCGAGACGTGCTTCTCCGT
LOC_Os01g57400
OsAffx.9395.1.S1_at--958--1391Chr01:33508291..33508315 (25 bp)
AGACGTGCTTCTCCGTGTCGCAGAG
LOC_Os01g57400
OsAffx.9395.1.S1_at--310--1371Chr01:33508270..33508294 (25 bp)
AGAGCGCCGGGCTGACTCAGGACCA
LOC_Os01g57400
OsAffx.9395.1.S1_at--737--7571Chr01:33508262..33508286 (25 bp)
GGGCTGACTCAGGACCAGTTCCTCG
LOC_Os01g57400
OsAffx.9395.1.S1_at--442--8931Chr01:33508258..33508282 (25 bp)
TGACTCAGGACCAGTTCCTCGCCTT
LOC_Os01g57400
OsAffx.9395.1.S1_at--20--3291Chr01:33508228..33508252 (25 bp)
CAAACATCAACTGCGCGAAGGTCTT
LOC_Os01g57400
Target Sequence 
TCACCGCGCACCACGGTTACGTGGTGGTGGAGGATGTGAAGGCGCCGGTCCCGGCGCTGACATGCAACAAGGTGCACGGG
GTGCAGGCGTCCGAGACGTGCTTCTCCGTGTCGCAGAGCGCCGGGCTGACTCAGGACCAGTTCCTCGCCTTCAACCCAAA
CATCAACTGCGCGAAGGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis