Browse Element(s) Details


Os.14427.1.S1_at

Description gb:AK102590.1
DB_XREF= gi:32987799
TID=Os.14427.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative diacylglycerol kinase (B1100D10.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098F18, full insert sequence.
FL= gb:AK102590.1 gb:AK119289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5742011/11diacylglycerol kinase variant B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57370OsAffx.23819.1.S1_at11/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57370OsAffx.23819.2.S1_x_at2/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57380OsAffx.2349.2.A1_at11/111+33501159..33501659hypothetical protein
LOC_Os01g57390OsAffx.11635.1.S1_x_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57390OsAffx.11635.1.S1_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57400OsAffx.9395.1.S1_at11/111+33508188..33508577LysM domain containing protein, expressed
LOC_Os01g57410Os.26876.1.S1_at11/111+33509437..33512989Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os01g57420Os.14427.1.S2_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57420Os.14427.1.S1_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57430OsAffx.23820.1.S1_at11/111+33520932..33521250hypothetical protein
LOC_Os01g57440OsAffx.23821.1.S1_at11/111+33522176..33524733DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g57450Os.34258.1.S1_at10/111+33525414..33528581universal stress protein, putative, expressed
LOC_Os01g57460Os.40269.1.S1_at10/111+33532042..33534551Frataxin homolog, putative, expressed
LOC_Os01g57470Os.9073.1.S1_at11/111+33534501..33535541EF hand family protein, expressed
LOC_Os01g57480Os.12081.2.S1_s_at11/111+33537079..33543180D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0004143molecular_functiondiacylglycerol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14427.1.S1_at--277--8271Chr01:33514320..33514344 (25 bp)
GGCATGGACTTGTGTTGCTATCTCC
LOC_Os01g57420
Os.14427.1.S1_at--1025--911Chr01:33513977..33514001 (25 bp)
AGGCTCATCGCGTCCAATTCAAATT
LOC_Os01g57420
Os.14427.1.S1_at--482--7771Chr01:33513945..33513969 (25 bp)
GGTGCAACCGACCATGCTTACATGA
LOC_Os01g57420
Os.14427.1.S1_at--615--8211Chr01:33513902..33513926 (25 bp)
GGAATCAGCCTCTTCCGAAGGATGA
LOC_Os01g57420
Os.14427.1.S1_at--1--9191Chr01:33513850..33513874 (25 bp)
TGCCGGCCAGGTGAAGATGCTTGCT
LOC_Os01g57420
Os.14427.1.S1_at--231--911Chr01:33513794..33513818 (25 bp)
AGGCACTGTCTATGTCAACGGTTCA
LOC_Os01g57420
Os.14427.1.S1_at--203--7791Chr01:33513699..33513723 (25 bp)
GGTGCTGCATTGTCGTTTCGGTACA
LOC_Os01g57420
Os.14427.1.S1_at--1120--2411Chr01:33513651..33513675 (25 bp)
AAAAGCTTGCTTTTCTTACTGAGCC
LOC_Os01g57420
Os.14427.1.S1_at--155--8931Chr01:33513632..33513656 (25 bp)
TGAGCCTTGTACAGCATGTTTGCAT
LOC_Os01g57420
Os.14427.1.S1_at--632--7311Chr01:33513494..33513518 (25 bp)
GTGCTGACTATCTTGTACCATGACC
LOC_Os01g57420
Os.14427.1.S1_at--282--5831Chr01:33513473..33513497 (25 bp)
GACCGTGAGCAATTTTCCAATCCAG
LOC_Os01g57420
Target Sequence 
GGCATGGACTTGTGTTGCTATCTCCAAAANGCCATGGCACTCGTCTTGCTCAGGCTCATCGCGTCCAATTCAAATTCCAC
AAGGGTGCAACCGACCATGCTTACATGAGACTTGATGGGGAACCCTGGAATCAGCCTCTTCCGAAGGATGACGGCAAGGT
CTTGGTGGAGATCTCACATGCCGGCCAGGTGAAGATGCTTGCTACCAAAAACTGCATTGCTAAAGGCATCCATGAGGCAC
TGTCTATGTCAACGGTTCATCCAGAGTCCAGCTCCTCCAGTGACGATACGGATGACGATGANGATTTCGCGGAGGAGAGG
AAGAACTTTGGTGCTGCATTGTCGTTTCGGTACATGGATGATGTGACCNAAGAGTAAAAAAGCTTGCTTTTCTTACTGAG
CCTTGTACAGCATGTTTGCATAGGACGTAGATTGCTGCACTAACTCTGGAAGCTGCGCCACCTGTAAGATCCTTTCCATG
ACGAGGTTTTGTACGTATGGCTGAGTTGTTGTGTGCCGTACAGAGCCAACTGGGGTGCTGACTATCTTGTACCATGACCG
TGAGCAATTTTCCAATCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis