Browse Element(s) Details


OsAffx.23821.1.S1_at

Description tigr:9629.m05627
TID=OsAffx.23821.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5744011/11DNA repair metallo-beta-lactamase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57370OsAffx.23819.1.S1_at11/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57370OsAffx.23819.2.S1_x_at2/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57380OsAffx.2349.2.A1_at11/111+33501159..33501659hypothetical protein
LOC_Os01g57390OsAffx.11635.1.S1_x_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57390OsAffx.11635.1.S1_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57400OsAffx.9395.1.S1_at11/111+33508188..33508577LysM domain containing protein, expressed
LOC_Os01g57410Os.26876.1.S1_at11/111+33509437..33512989Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os01g57420Os.14427.1.S2_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57420Os.14427.1.S1_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57430OsAffx.23820.1.S1_at11/111+33520932..33521250hypothetical protein
LOC_Os01g57440OsAffx.23821.1.S1_at11/111+33522176..33524733DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g57450Os.34258.1.S1_at10/111+33525414..33528581universal stress protein, putative, expressed
LOC_Os01g57460Os.40269.1.S1_at10/111+33532042..33534551Frataxin homolog, putative, expressed
LOC_Os01g57470Os.9073.1.S1_at11/111+33534501..33535541EF hand family protein, expressed
LOC_Os01g57480Os.12081.2.S1_s_at11/111+33537079..33543180D-mannose binding lectin family protein, expressed
LOC_Os01g57490Os.41980.1.S1_at8/111+33545242..33550592D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0003910molecular_functionDNA ligase (ATP) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23821.1.S1_at--334--2151Chr01:33522744..33522768 (25 bp)
ACAGACCAGCTTGACCAGGATCCGT
LOC_Os01g57440
OsAffx.23821.1.S1_at--459--7971Chr01:33522727..33522751 (25 bp)
GGATCCGTGCCGTTCCAAGGTACAG
LOC_Os01g57440
OsAffx.23821.1.S1_at--1129--6011Chr01:33522692..33522716 (25 bp)
GAGAGTCTTGATGCTTTGAACACGG
LOC_Os01g57440
OsAffx.23821.1.S1_at--23--7751Chr01:33522669..33522693 (25 bp)
GGTGTGCCCCACTATAGGAATCATG
LOC_Os01g57440
OsAffx.23821.1.S1_at--745--3051Chr01:33522651..33522675 (25 bp)
AATCATGCCTTCTGGTATTCCTTGG
LOC_Os01g57440
OsAffx.23821.1.S1_at--482--1411Chr01:33522537..33522561 (25 bp)
AGAAATGGACTACGATCCCCTGTCA
LOC_Os01g57440
OsAffx.23821.1.S1_at--447--7931Chr01:33522492..33522516 (25 bp)
GGATTCTTATAGTCTGCCTTACTCA
LOC_Os01g57440
OsAffx.23821.1.S1_at--592--4451Chr01:33522477..33522501 (25 bp)
GCCTTACTCAGAGCATGCTTGTTTT
LOC_Os01g57440
OsAffx.23821.1.S1_at--1087--7951Chr01:33522403..33522427 (25 bp)
GGATCGTCAGCACATCGTTTTGTTA
LOC_Os01g57440
OsAffx.23821.1.S1_at--111--11Chr01:33522388..33522412 (25 bp)
CGTTTTGTTACGTGAATCCTCGCCA
LOC_Os01g57440
OsAffx.23821.1.S1_at--343--7951Chr01:33522297..33522321 (25 bp)
GGATATCTCAGTCTTGACACCTAAA
LOC_Os01g57440
Target Sequence 
ACAGACCAGCTTGACCAGGATCCGTGCCGTTCCAAGGTACAGCCTTACTATTGAGAGTCTTGATGCTTTGAACACGGTGT
GCCCCACTATAGGAATCATGCCTTCTGGTATTCCTTGGCTCTGGAAAAACAGTAAAGGGAAGGCCAAGTCTGGTGTTAAA
TCACCAGCCAAGTCTATCAGATGCAAAGGGCTAGATGAAGGCGCAATAGAAATGGACTACGATCCCCTGTCACCGCCAAA
GCTATTTGAGAAGGATTCTTATAGTCTGCCTTACTCAGAGCATGCTTGTTTTGCTGAGTTAGAGAATTTTATGCTTATAG
TACGACCATCAACTGTCATAGGGATCGTCAGCACATCGTTTTGTTACGTGAATCCTCGCCACCACTTCAGTCATCTTTGT
GCAGACAATGTGTATTCTGACAAGACACCTGAGAAGAACAAGGGTAAGGATATCTCAGTCTTGACACCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis