Browse Element(s) Details


Os.26876.1.S1_at

Description gb:AK067606.1
DB_XREF= gi:32977624
TID=Os.26876.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1100D10.28 (B1100D10.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112M07, full insert sequence.
FL= gb:AK067606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5741011/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57360NANA1+33481126..33485168Acyltransferase family protein, expressed
LOC_Os01g57370OsAffx.23819.1.S1_at11/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57370OsAffx.23819.2.S1_x_at2/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57380OsAffx.2349.2.A1_at11/111+33501159..33501659hypothetical protein
LOC_Os01g57390OsAffx.11635.1.S1_x_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57390OsAffx.11635.1.S1_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57400OsAffx.9395.1.S1_at11/111+33508188..33508577LysM domain containing protein, expressed
LOC_Os01g57410Os.26876.1.S1_at11/111+33509437..33512989Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os01g57420Os.14427.1.S2_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57420Os.14427.1.S1_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57430OsAffx.23820.1.S1_at11/111+33520932..33521250hypothetical protein
LOC_Os01g57440OsAffx.23821.1.S1_at11/111+33522176..33524733DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g57450Os.34258.1.S1_at10/111+33525414..33528581universal stress protein, putative, expressed
LOC_Os01g57460Os.40269.1.S1_at10/111+33532042..33534551Frataxin homolog, putative, expressed
LOC_Os01g57470Os.9073.1.S1_at11/111+33534501..33535541EF hand family protein, expressed
LOC_Os01g57480Os.12081.2.S1_s_at11/111+33537079..33543180D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26876.1.S1_at--662--4971Chr01:33511438..33511462 (25 bp)
GCATGCCCAATGAGTTGACCTACAT
LOC_Os01g57410
Os.26876.1.S1_at--937--6531Chr01:33511512..33511536 (25 bp)
GATTTACTGCGCGAGTTGTGCTCAA
LOC_Os01g57410
Os.26876.1.S1_at--1069--2511Chr01:33511554..33511578 (25 bp)
AACTTGCTTGAAGAGTGGCGCCCTA
LOC_Os01g57410
Os.26876.1.S1_at--277--7551Chr01:33511568..33511592 (25 bp)
GTGGCGCCCTAAGTTTTCGAATCAA
LOC_Os01g57410
Os.26876.1.S1_at--244--2631Chr01:33511592..33511616 (25 bp)
AACCGTGCATTTACCTTGAGTCATC
LOC_Os01g57410
Os.26876.1.S1_at--472--5471Chr01:33511654..33511678 (25 bp)
GAACTCTATTCCTCATCTACAGTAA
LOC_Os01g57410
Os.26876.1.S1_at--758--1951Chr01:33511696..33511720 (25 bp)
ACTGGCATGTCCTGTGTATGCTTCA
LOC_Os01g57410
Os.26876.1.S1_at--106--8331Chr01:33511759..33511783 (25 bp)
GGCTCCTAGCCTCATGTACAGGAAT
LOC_Os01g57410
Os.26876.1.S1_at--498--8671Chr01:33512621..33512642 (22 bp)
TGTGTTTTCCTTGCTTCAGACTGGC
LOC_Os01g57410
Os.26876.1.S1_at--772--1391Chr01:33512635..33512659 (25 bp)
AGACTGGCGTTTCATACCGATTACC
LOC_Os01g57410
Os.26876.1.S1_at--139--2531Chr01:33512712..33512736 (25 bp)
AACTTCTTGCTTTGCCAGGCTGATA
LOC_Os01g57410
Target Sequence 
GCATGCCCAATGAGTTGACCTACATTACACTCATTGAAGGCCTTGCAAATGAGGATTTCTTGAAGGAGACAAGAGATTTA
CTGCGCGAGTTGTGCTCAAGAGGTGTTCTAAATAAAAACTTGCTTGAAGAGTGGCGCCCTAAGTTTTCGAATCAAACCGT
GCATTTACCTTGAGTCATCATGAATCCAAAACCTTTAGTACTGTTGAGTATCCATGGAACTCTATTCCTCATCTACAGTA
ATGTGGAATCAGTGGCACACTGGCATGTCCTGTGTATGCTTCAAGATACTTTTCATGATGATGGGACAGACCACAGACGA
GGGCTCCTAGCCTCATGTACAGGAATCGTGATTGTGTTTTCCTTGCTTCAGACTGGCGTTTCATACCGATTACCTTACAT
CAAACTGACATCTCAAATTACTGCGTTATAATTTCATTTCGGTTGCAACTTCTTGCTTTGCCAGGCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis