Browse Element(s) Details


Os.34258.1.S1_at

Description gb:AK072280.1
DB_XREF= gi:32982303
TID=Os.34258.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.34258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1100D10.31 (B1100D10.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018C18, full insert sequence.
FL= gb:AK072280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5745010/11universal stress protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57380OsAffx.2349.2.A1_at11/111+33501159..33501659hypothetical protein
LOC_Os01g57390OsAffx.11635.1.S1_x_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57390OsAffx.11635.1.S1_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57400OsAffx.9395.1.S1_at11/111+33508188..33508577LysM domain containing protein, expressed
LOC_Os01g57410Os.26876.1.S1_at11/111+33509437..33512989Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os01g57420Os.14427.1.S2_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57420Os.14427.1.S1_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57430OsAffx.23820.1.S1_at11/111+33520932..33521250hypothetical protein
LOC_Os01g57440OsAffx.23821.1.S1_at11/111+33522176..33524733DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g57450Os.34258.1.S1_at10/111+33525414..33528581universal stress protein, putative, expressed
LOC_Os01g57460Os.40269.1.S1_at10/111+33532042..33534551Frataxin homolog, putative, expressed
LOC_Os01g57470Os.9073.1.S1_at11/111+33534501..33535541EF hand family protein, expressed
LOC_Os01g57480Os.12081.2.S1_s_at11/111+33537079..33543180D-mannose binding lectin family protein, expressed
LOC_Os01g57490Os.41980.1.S1_at8/111+33545242..33550592D-mannose binding lectin family protein
LOC_Os01g57500NANA1+33550900..33553023hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34258.1.S1_at--97--5691Chr01:33527771..33527795 (25 bp)
GACTTGGCTTGTCCGCTATGATCAT
LOC_Os01g57450
Os.34258.1.S1_at--1--171Chr01:33527684..33527708 (25 bp)
ATTATTGCGTGCATCACTGTGTCTG
LOC_Os01g57450
Os.34258.1.S1_at--316--10831Chr01:33527654..33527678 (25 bp)
TTGTGGTTGTTCGTTACCCCGATGA
LOC_Os01g57450
Os.34258.1.S1_at--963--8911Chr01:33527590..33527614 (25 bp)
TGAGCTGCACACTGTGCCTGAGGAT
LOC_Os01g57450
Os.34258.1.S1_at--1047--5431Chr01:33527565..33527589 (25 bp)
GAACCTGTGTATCATGATGCACCTG
LOC_Os01g57450
Os.34258.1.S1_at--176--5151Chr01:33525661..33525685 (25 bp)
GCAACTACTGTTTAGCTGTTGGCCT
LOC_Os01g57450
Os.34258.1.S1_at--970--331Chr01:33525518..33525542 (25 bp)
ATACAGTCCAGTATCCCCGTGGGTG
LOC_Os01g57450
Os.34258.1.S1_at--656--9391Chr01:33525463..33525487 (25 bp)
TCGTTGGTCACGAATCCATGTTGTT
LOC_Os01g57450
Os.34258.1.S1_at--305--6631Chr01:33525444..33525468 (25 bp)
GTTGTTTCATACCAAATCCAGGCTT
LOC_Os01g57450
Os.34258.1.S1_at--361--3491Chr01:33525426..33525450 (25 bp)
CAGGCTTCATAATGTGGCGCGTCTT
LOC_Os01g57450
Os.34258.1.S1_at--548--8471Chr01:33525412..33525436 (25 bp)
TGGCGCGTCTTGTGTTCTTGCCGAA
NONE
Target Sequence 
GACTTGGCTTGTCCGCTATGATCATGGGAAGCCGCGGCTTCGGTGCCTCGCGGAAGGGCGGGAAGGGGAGGCTTGGGAGT
GTTAGTGATTATTGCGTGCATCACTGTGTCTGCCCGGTTGTGGTTGTTCGTTACCCCGATGATGCTGCAGGTGCCGACGG
GGAGGCAGCAGGGCCAACAGATGAGCTGCACACTGTGCCTGAGGATGAACCTGTGTATCATGATGCACCTGATGTGCAGA
AAGAAAACTGAGGTAATGCATCTGGAGCGCAAGGAAAACGTGAGAGGCTTGCCCGAGGCGATCTGNGTATTTGAACAATG
CAACTACTGTTTAGCTGTTGGCCTGTTGCTTCTGTANCTACTGGATATCATAAACTGGCTTGACCAGCAAGCTNCTTTTC
ATTTTGCGTGAAGTATTGGACTCTTTAGATCAGGGGAGTTTGTTGGTTTACTTTGTAAANTGATACAGTCCAGTATCCCC
GTGGGTGGTGGAGAAAGGANNTNNGNATGGGATGTTTTCGTTGGTCACGAATCCATGTTGTTTCATACCAAATCCAGGCT
TCATAATGTGGCGCGTCTTGTGTTCTTGCCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis