Browse Element(s) Details


Os.47465.1.S1_at

Description gb:BX898853
DB_XREF= gi:40488330
DB_XREF=BX898853
CLONE=y804f02p3
TID=Os.47465.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47465 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_193070.1 (A.thaliana) extensin-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g573509/11Diacylglycerol kinase catalytic domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57310Os.35231.1.S1_at10/111+33447347..33451219Rp1, putative
LOC_Os01g57324OsAffx.11634.2.S1_x_at11/111+33462681..33463463hypothetical protein
LOC_Os01g57324OsAffx.11634.1.S1_x_at8/111+33462681..33463463hypothetical protein
LOC_Os01g57340Os.35231.1.S1_at2/111+33467975..33471847Rp1, putative
LOC_Os01g57350Os.26990.1.S1_at11/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57350OsAffx.9397.1.S1_at10/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57350Os.47465.1.S1_at9/111+33472776..33479375Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os01g57360NANA1+33481126..33485168Acyltransferase family protein, expressed
LOC_Os01g57370OsAffx.23819.1.S1_at11/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57370OsAffx.23819.2.S1_x_at2/111+33495277..33499491cation channel family protein, expressed
LOC_Os01g57380OsAffx.2349.2.A1_at11/111+33501159..33501659hypothetical protein
LOC_Os01g57390OsAffx.11635.1.S1_x_at11/111+33504070..33504593LysM domain containing protein, expressed
LOC_Os01g57390OsAffx.11635.1.S1_at11/111+33504070..33504593LysM domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0030148biological_processsphingolipid biosynthesis
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0017050molecular_functionD-erythro-sphingosine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47465.1.S1_at--325--5091Chr01:33478034..33478058 (25 bp)
GCACCTTACATGATTTGCCTTAGCT
LOC_Os01g57350
Os.47465.1.S1_at--1042--6511Chr01:33478023..33478047 (25 bp)
GATTTGCCTTAGCTAAAGCCTTCGA
LOC_Os01g57350
Os.47465.1.S1_at--747--10451Chr01:33478015..33478039 (25 bp)
TTAGCTAAAGCCTTCGACTTTTGGC
LOC_Os01g57350
Os.47465.1.S1_at--938--4311Chr01:33478005..33478029 (25 bp)
CCTTCGACTTTTGGCTTGATAATTG
LOC_Os01g57350
Os.47465.1.S1_at--575--4931Chr01:33477992..33478016 (25 bp)
GCTTGATAATTGGTCGATGTCATCC
LOC_Os01g57350
Os.47465.1.S1_at--99--7811Chr01:33477981..33478005 (25 bp)
GGTCGATGTCATCCAAACAGTTTAA
LOC_Os01g57350
Os.47465.1.S1_at--806--5531Chr01:33477932..33477956 (25 bp)
GAAACTTATCAGATATCTTCCAGAT
LOC_Os01g57350
Os.47465.1.S1_at--638--6511Chr01:33477921..33477945 (25 bp)
GATATCTTCCAGATTGGTACATAAC
LOC_Os01g57350
Os.47465.1.S1_at--269--2071Chr01:33477892..33477916 (25 bp)
ACATAATTGGCTCGAGTCGTTTTCA
LOC_Os01g57350
Os.47465.1.S1_at--112--4811NONE
GCTCGAGTCGTTTTCAGTGCTTAAA
NONE
Os.47465.1.S1_at--322--10331NONE
TTTCAGTGCTTAAATTATACTCCCT
NONE
Target Sequence 
GCACCTTACATGATTTGCCTTAGCTAAAGCCTTCGACTTTTGGCTTGATAATTGGTCGATGTCATCCAAACAGTTTAATT
GCACAATACTAAAGTTGATTATGAAACTTATCAGATATCTTCCAGATTGGTACATAACCAGNACATAATTGGCTCGAGTC
GTTTTCAGTGCTTAAATTATACTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis