Browse Element(s) Details


OsAffx.11650.1.S1_at

Description tigr:9629.m05751
TID=OsAffx.11650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphoglycerate kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5861011/11Phosphoglycerate kinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58580Os.8591.1.S1_at11/111+34195990..34198683latex-abundant protein, putative, expressed
LOC_Os01g58590NANA1+34203653..34205684hypothetical protein
LOC_Os01g58600Os.22639.1.S1_at4/111+34208929..34209138hypothetical protein
LOC_Os01g58610OsAffx.11650.1.S1_at11/111+34211768..34214261Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os01g58620Os.7800.1.S1_at11/111+34216946..34218575expressed protein
LOC_Os01g58630Os.36426.1.S1_at11/111+34220608..34222844pentatricopeptide, putative, expressed
LOC_Os01g58640Os.11682.1.S1_at11/111+34224228..34231210Ser/Thr protein phosphatase family protein, expressed
LOC_Os01g58650OsAffx.21682.1.S1_at11/111+34233218..34236440Protease inhibitor/seed storage/LTP family protein
LOC_Os01g58660Os.16752.1.S1_at11/111+34238146..34238836expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004618molecular_functionphosphoglycerate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11650.1.S1_at--193--6851Chr01:34213078..34213102 (25 bp)
GTTTGCGAAGAAGCTTGCCTCCCTC
LOC_Os01g58610
OsAffx.11650.1.S1_at--821--9311Chr01:34213097..34213385 (25 bp)
TCCCTCGCTGATCTTTATGAGCTTG
LOC_Os01g58610
OsAffx.11650.1.S1_at--34--8551Chr01:34213396..34213420 (25 bp)
TGGAGCTGTTTCAAACCCCAAGCGG
LOC_Os01g58610
OsAffx.11650.1.S1_at--1151--3231Chr01:34213414..34213438 (25 bp)
CAAGCGGCCATTTGCGGCTATTGTA
LOC_Os01g58610
OsAffx.11650.1.S1_at--782--9111Chr01:34213426..34213450 (25 bp)
TGCGGCTATTGTAGGTGGTTCCAAA
LOC_Os01g58610
OsAffx.11650.1.S1_at--523--5651Chr01:34213496..34213520 (25 bp)
GACATCCTTCTATTGGGTGGCGGTA
LOC_Os01g58610
OsAffx.11650.1.S1_at--390--6531Chr01:34213548..34213572 (25 bp)
GATTTCCAGTAGGAGCTTCCTTGGT
LOC_Os01g58610
OsAffx.11650.1.S1_at--228--6311Chr01:34213577..34213601 (25 bp)
GATGACAAACTCGAGCTAGCAACAT
LOC_Os01g58610
OsAffx.11650.1.S1_at--1062--1051Chr01:34213626..34213650 (25 bp)
AGGGTGTATCTCTTATGTTGCCAAC
LOC_Os01g58610
OsAffx.11650.1.S1_at--331--1211Chr01:34213671..34213695 (25 bp)
AGTTTGCTCCTGAGGCTAACTGTCA
LOC_Os01g58610
OsAffx.11650.1.S1_at--76--6071Chr01:34214158..34214182 (25 bp)
GAGTTGCCAATGTTATGAGCCATAT
LOC_Os01g58610
Target Sequence 
GTTTGCGAAGAAGCTTGCCTCCCTCGCTGATCTTTATGAGCTTGATTACCTTGTTGGAGCTGTTTCAAACCCCAAGCGGC
CATTTGCGGCTATTGTAGGTGGTTCCAAAGTGTCATCTAAGATTGGAGTTATTGAATCACTCTTGGAGAAGTGTGACATC
CTTCTATTGGGTGGCGGTATGATATTCACATTTTACAAAGCACAAGGATTTCCAGTAGGAGCTTCCTTGGTGGAAGATGA
CAAACTCGAGCTAGCAACATCTCTCCTTGCAAAGGCAAAAGAAAAGGGTGTATCTCTTATGTTGCCAACAGATGTAATTG
TTGCTGATAAGTTTGCTCCTGAGGCTAACTGTCAGGCAATTGCAAAGAAGCTGGCTGAGCTTAGTGGCAAGGGTGTAACA
ACAATAATTGGAGGTAAAGACTCTGTTGCAGCTGTTGAGAAGGTAGGAGTTGCCAATGTTATGAGCCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis