Browse Element(s) Details


OsAffx.11674.1.S1_x_at

Description tigr:9629.m05907
TID=OsAffx.11674.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6016011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60120Os.8845.1.S1_at11/111+35102974..35107712expressed protein
LOC_Os01g60130OsAffx.11673.2.S1_at11/111+35112250..35113259hypothetical protein
LOC_Os01g60130OsAffx.11673.1.S1_at3/111+35112250..35113259hypothetical protein
LOC_Os01g60140OsAffx.23869.1.S1_at11/111+35115389..35118260cation/hydrogen exchanger, putative, expressed
LOC_Os01g60150NANA1+35123100..35123507hypothetical protein
LOC_Os01g60160OsAffx.11674.1.S1_x_at11/111+35127306..35127677hypothetical protein
LOC_Os01g60160OsAffx.11674.1.S1_at11/111+35127306..35127677hypothetical protein
LOC_Os01g60170Os.42186.1.S1_at11/111+35128008..35128880expressed protein
LOC_Os01g60180NANA1+35130341..35130895hypothetical protein
LOC_Os01g60190Os.4899.1.S1_a_at11/111+35131159..351349052,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed
LOC_Os01g60200Os.6496.1.S1_a_at11/111+35135032..35139051expressed protein
LOC_Os01g60210NANA1+35149827..35150159transposon protein, putative, unclassified
LOC_Os01g60220NANA1+35150794..35156949transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11674.1.S1_x_at--913--3751Chr01:35127370..35127394 (25 bp)
CTCATCGCGCACCATGGCTGAGGGC
LOC_Os01g60160
OsAffx.11674.1.S1_x_at--380--8371Chr01:35127448..35127472 (25 bp)
GGCGTCACGGCAACGTCGGAATCCT
LOC_Os01g60160
OsAffx.11674.1.S1_x_at--1135--7091Chr01:35127451..35127475 (25 bp)
GTCACGGCAACGTCGGAATCCTGCT
LOC_Os01g60160
OsAffx.11674.1.S1_x_at--150--9691Chr01:35127452..35127476 (25 bp)
TCACGGCAACGTCGGAATCCTGCTG
LOC_Os01g60160
OsAffx.11674.1.S1_x_at--42--5151Chr01:35127457..35127481 (25 bp)
GCAACGTCGGAATCCTGCTGCCGCG
LOC_Os01g60160
OsAffx.11674.1.S1_x_at--685--3392Chr01:35127493..35127517 (25 bp)
CAGCTCACCAGCACGACGGCATTGA
LOC_Os01g60160
OsAffx.11674.1.S1_x_at--1112--9652Chr01:35127497..35127521 (25 bp)
TCACCAGCACGACGGCATTGAGAAT
LOC_Os01g60160
OsAffx.11674.1.S1_x_at--1120--5092Chr01:35127503..35127527 (25 bp)
GCACGACGGCATTGAGAATGGCGAT
LOC_Os01g60160
OsAffx.11674.1.S1_x_at--180--6191Chr01:35127549..35127573 (25 bp)
GAGGACGACGCTCTGGCGCTGACGG
LOC_Os01g60160
OsAffx.11674.1.S1_x_at--659--3411Chr01:35127580..35127604 (25 bp)
CAGAGGCGGAAGTTGCTTGGGCGGC
LOC_Os01g60160
OsAffx.11674.1.S1_x_at--395--3931Chr01:35127586..35127610 (25 bp)
CGGAAGTTGCTTGGGCGGCCGTCGG
LOC_Os01g60160
Target Sequence 
CTCATCGCGCACCATGGCTGAGGGCGGCGGCGGGTAGAGCAGCGGTGGGCGAGCGCATGGGGGCGTGCGGCGAACGGCGG
CGTCACGGCAACGTCGGAATCCTGCTGCCGCGCCGCCCCTCACCAGCTCACCAGCACGACGGCATTGAGAATGGCGATGG
AGGAGTGGAGGACGACGACGAGGACGACGCTCTGGCGCTGACGGCGGCGGCAGAGGCGGAAGTTGCTTGGGCGGCCGTCG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11674.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis