Browse Element(s) Details


OsAffx.11696.1.S1_at

Description tigr:9629.m06139
TID=OsAffx.11696.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6222011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62160Os.33927.1.S1_at11/111+36311107..36314405expressed protein
LOC_Os01g62170OsAffx.21761.1.S1_x_at11/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.4.S1_x_at10/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.21761.1.S1_at9/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_x_at6/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_at5/111+36320830..36322782hypothetical protein
LOC_Os01g62180NANA1+36322908..36323828hypothetical protein
LOC_Os01g62190Os.10411.1.S1_at11/111+36328091..36328950Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62200Os.38316.1.S1_at11/111+36329408..36331950expressed protein
LOC_Os01g62200Os.38316.1.S1_s_at10/111+36329408..36331950expressed protein
LOC_Os01g62200Os.27407.1.A1_at6/111+36329408..36331950expressed protein
LOC_Os01g62210Os.47966.1.S1_at10/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62210OsAffx.21760.1.S1_at1/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62220OsAffx.11696.1.S1_at11/111+36338499..36339869pentatricopeptide, putative
LOC_Os01g62230Os.19784.1.S1_at10/111+36340890..36341546Histone H2B, putative, expressed
LOC_Os01g62244Os.12603.1.S1_at11/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.51168.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.52300.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62260Os.28139.1.S1_at10/111+36356643..36357818Osmotin-like protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11696.1.S1_at--274--2691Chr01:36339309..36339333 (25 bp)
AAGCTGGATCGTGTTACTCTTCTTG
LOC_Os01g62220
OsAffx.11696.1.S1_at--757--8491Chr01:36339332..36339356 (25 bp)
TGGCTTGCTGTTTGGTTGCAACCAT
LOC_Os01g62220
OsAffx.11696.1.S1_at--678--6771Chr01:36339376..36339400 (25 bp)
GTTACTCATTGTTCAGGACTGCCGA
LOC_Os01g62220
OsAffx.11696.1.S1_at--801--6871Chr01:36339417..36339441 (25 bp)
GTATTGAGACCTGAGCACTATGCTT
LOC_Os01g62220
OsAffx.11696.1.S1_at--1032--451Chr01:36339451..36339475 (25 bp)
ATCTCTTCTCCAGGGCTAAGCGATT
LOC_Os01g62220
OsAffx.11696.1.S1_at--305--6831Chr01:36339491..36339515 (25 bp)
GTTTCTTGAGAACCTTCCCTTCGAG
LOC_Os01g62220
OsAffx.11696.1.S1_at--762--4951Chr01:36339596..36339620 (25 bp)
GCATATTCATGCACTGGATCCTAAG
LOC_Os01g62220
OsAffx.11696.1.S1_at--1088--6471Chr01:36339621..36339645 (25 bp)
GATACTTCTTCATACATCCTTCTAT
LOC_Os01g62220
OsAffx.11696.1.S1_at--489--9531Chr01:36339645..36339669 (25 bp)
TCTAATGTTTACTCTGCAGCAGGAA
LOC_Os01g62220
OsAffx.11696.1.S1_at--1074--3471Chr01:36339759..36339783 (25 bp)
CAGGTTCATGTCTTCTTCAATGGAG
LOC_Os01g62220
OsAffx.11696.1.S1_at--928--5991Chr01:36339781..36339805 (25 bp)
GAGACCGCAGACATCCAAAGAGTGA
LOC_Os01g62220
Target Sequence 
AAGCTGGATCGTGTTACTCTTCTTGGCTTGCTGTTTGGTTGCAACCATGCTGGTCTGGTTGATGAAGGTTACTCATTGTT
CAGGACTGCCGAGATGGAGCAGCCGGGTGTATTGAGACCTGAGCACTATGCTTGTGTGGTTGATCTCTTCTCCAGGGCTA
AGCGATTTGATGATGCCAAGCGGTTTCTTGAGAACCTTCCCTTCGAGCCAGGCATTGGATTCTGGAAGTCGTTGATAGGA
GGGTGCCAGATTCACTGGAATAGGGAGCTGGCTAAGAGTGTCGCGAAGCATATTCATGCACTGGATCCTAAGGATACTTC
TTCATACATCCTTCTATCTAATGTTTACTCTGCAGCAGGAAGCTGGCAGGATGTGTCAATGATCAGAAGGGAAATTAAAG
AAAAGGGACTGAAGAGGATCACTGGTTGCAGTTGGATTGAGGTCCAGAACCAGGTTCATGTCTTCTTCAATGGAGACCGC
AGACATCCAAAGAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis