Browse Element(s) Details


OsAffx.11715.1.S1_at

Description tigr:9629.m06311
TID=OsAffx.11715.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Nsp1-like C-terminal region, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6378010/11Nsp1-like C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63750OsAffx.18122.1.S1_x_at2/111+37307938..37308616hypothetical protein
LOC_Os01g63760Os.10827.1.S1_x_at9/111+37308980..37312768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63760Os.46055.2.S1_x_at4/111+37308980..37312768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63770Os.6258.1.S1_a_at11/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63770OsAffx.7026.1.S1_x_at2/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63780OsAffx.11715.1.S1_at10/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63780Os.25247.1.A1_at2/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63790NANA1+37338746..37340164expressed protein
LOC_Os01g63800Os.16802.1.S1_a_at11/111+37343933..37344897Pleckstrin homology domain-containing protein 1, putative, expressed
LOC_Os01g63810Os.21123.1.S1_at11/111+37348393..37350692Starch binding domain containing protein, expressed
LOC_Os01g63820Os.37564.2.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.54436.1.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.1.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_at9/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63830OsAffx.23907.1.S1_at10/111+37361249..37362498Dehydrodolichyl diphosphate synthase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11715.1.S1_at--968--9911Chr01:37338146..37338170 (25 bp)
TACTGCTATCACTCCAGTAGCATCA
LOC_Os01g63780
OsAffx.11715.1.S1_at--726--9211Chr01:37338134..37338158 (25 bp)
TCCAGTAGCATCACAGGCACCTAAG
LOC_Os01g63780
OsAffx.11715.1.S1_at--599--8251Chr01:37338119..37338143 (25 bp)
GGCACCTAAGCTACCATCAGAAATT
LOC_Os01g63780
OsAffx.11715.1.S1_at--629--8971Chr01:37337915..37337939 (25 bp)
TGAACTTCAAGATCGCACTGCGAAG
LOC_Os01g63780
OsAffx.11715.1.S1_at--756--6371Chr01:37337905..37337929 (25 bp)
GATCGCACTGCGAAGTTCCGGAAGC
LOC_Os01g63780
OsAffx.11715.1.S1_at--1059--2811Chr01:37337893..37337917 (25 bp)
AAGTTCCGGAAGCATGCCACTGCAA
LOC_Os01g63780
OsAffx.11715.1.S1_at--219--4991Chr01:37337882..37337906 (25 bp)
GCATGCCACTGCAATATCTGAATGG
LOC_Os01g63780
OsAffx.11715.1.S1_at--1156--791Chr01:37337861..37337885 (25 bp)
ATGGGACAGGAGAATTCTGCAGAAC
LOC_Os01g63780
OsAffx.11715.1.S1_at--219--2131Chr01:37337838..37337862 (25 bp)
ACAGGACTGTTCTTATAAGGCTTGA
LOC_Os01g63780
OsAffx.11715.1.S1_at--1011--2451Chr01:37336735..37336759 (25 bp)
AACACAAACAAGCTTGGAGAGGCAA
LOC_Os01g63780
OsAffx.11715.1.S1_at--868--2771NONE
AAGAGATACAATACATCAGCCTCCT
NONE
Target Sequence 
TACTGCTATCACTCCAGTAGCATCACAGGCACCTAAGCTACCATCAGAAATTGTTGGGAAAAATGTTGAGCAGATTATTA
GGGACTGGAATAATGAACTTCAAGATCGCACTGCGAAGTTCCGGAAGCATGCCACTGCAATATCTGAATGGGACAGGAGA
ATTCTGCAGAACAGGACTGTTCTTATAAGGCTTGAGGCTGAGGTGGCTAAAGTTGTTGAAACACAAACAAGCTTGGAGAG
GCAACTTGAGTTAATAGAAACTCACCAGAAAGAGGTTGACAAGGCTCTGCAGAGCATGGAGGAGGAAGCAGAGCGGGTAT
TCCAGGATGAACGGCTGTTGCTTCGTGAAGATGAGGCTGCTTCTGCAAGAGATACAATACATCAGCCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis